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PDBsum entry 6v1v
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Top Page protein Protein-protein interface(s) pores links
Pore analysis for: 6v1v calculated with MOLE 2.0 PDB id
6v1v
Pores calculated on whole structure Pores calculated excluding ligands
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17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.34 3.12 78.4 -1.86 -0.44 16.0 90 7 6 15 4 0 0 0  
2 1.47 3.27 85.4 -2.20 -0.54 27.1 85 9 11 8 6 2 0 0  
3 1.66 2.23 110.2 -2.23 -0.42 24.6 85 8 10 9 5 1 0 0  
4 1.45 2.39 128.3 -0.80 -0.37 13.3 86 5 10 8 12 1 4 0  
5 1.30 3.00 132.3 -2.15 -0.51 23.5 84 13 15 17 8 3 4 0  
6 1.27 2.44 133.5 -2.41 -0.47 23.3 85 6 9 10 4 3 0 0  
7 1.50 2.70 155.8 -1.95 -0.46 24.0 82 11 15 11 9 4 4 0  
8 1.49 3.03 161.7 -2.08 -0.47 21.8 86 14 17 22 8 3 0 0  
9 1.40 2.79 159.8 -2.10 -0.45 24.4 84 8 10 11 6 2 1 0  
10 1.21 1.23 165.8 -1.63 -0.48 14.4 88 7 6 18 10 0 0 0  
11 1.30 3.11 173.1 -1.77 -0.43 17.0 88 10 10 21 8 1 0 0  
12 1.37 3.50 180.2 -2.06 -0.51 24.9 85 12 15 14 10 3 0 0  
13 1.49 1.87 195.7 -2.02 -0.45 24.5 83 16 17 16 9 4 0 0  
14 1.29 3.16 195.0 -1.97 -0.56 19.4 88 9 15 23 7 2 1 0  
15 2.06 3.15 245.2 -1.85 -0.53 21.8 85 13 17 19 9 3 1 0  
16 1.14 1.23 35.4 -1.55 -0.54 13.1 85 5 1 5 1 1 1 0  
17 1.11 1.32 56.6 -1.54 -0.50 19.4 84 3 5 4 2 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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