spacer
spacer

PDBsum entry 6txc

Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6txc calculated with MOLE 2.0 PDB id
6txc
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
26 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.76 3.07 30.1 -1.97 -0.53 13.7 76 4 2 3 1 1 2 0  
2 2.75 2.86 37.3 -1.71 -0.27 26.1 78 6 6 3 3 1 1 0  0KX 705 B
3 2.27 2.41 38.6 -2.25 -0.09 33.8 76 6 5 1 2 2 0 1  
4 2.25 3.38 43.6 -1.73 -0.59 19.9 85 5 4 3 2 1 2 0  
5 2.29 2.52 85.0 -2.30 -0.32 33.0 76 13 8 1 4 3 3 0  GTP 707 G
6 2.47 2.72 86.8 -2.30 -0.49 29.4 82 10 11 5 2 3 2 0  
7 1.56 2.09 110.3 -2.20 -0.26 28.0 74 21 7 2 4 5 2 2  GTP 707 G
8 1.30 2.71 115.9 -1.38 -0.21 21.6 81 21 5 5 8 4 0 1  MG 704 I GTP 706 I DTP 701 K SO4 708 L
9 1.94 1.88 116.5 -2.00 -0.36 24.5 80 19 4 3 3 3 1 1  MG 704 I GTP 706 I DTP 701 K
10 1.33 1.34 121.5 -2.18 -0.32 26.7 77 18 9 3 2 6 1 2  
11 1.64 1.60 125.4 -2.00 -0.22 25.8 75 22 7 3 5 6 1 3  
12 1.74 3.67 126.9 -2.38 -0.52 24.8 81 13 6 6 5 2 5 0  SO4 707 A
13 1.43 2.71 142.2 -1.11 -0.13 19.6 80 22 7 8 12 6 0 2  SO4 708 L
14 1.79 1.73 151.6 -2.01 -0.25 25.2 76 26 8 3 5 7 2 2  
15 1.45 2.73 160.0 -1.84 -0.22 24.5 79 26 10 7 9 6 0 3  0KX 706 C SO4 708 C
16 1.47 1.48 181.2 -2.17 -0.60 22.4 85 15 10 8 7 2 2 0  
17 1.21 2.73 204.2 -1.80 -0.32 23.3 80 26 11 9 9 5 3 2  SO4 707 I
18 1.87 3.23 217.1 -2.30 -0.33 26.3 77 28 14 8 6 7 6 2  SO4 707 A
19 1.29 2.86 220.6 -1.88 -0.25 27.6 79 30 19 5 12 7 4 0  0KX 706 C SO4 708 C
20 1.35 1.43 235.5 -2.46 -0.63 23.9 83 19 15 12 7 2 5 0  SO4 707 A
21 1.29 2.87 411.8 -1.94 -0.27 26.2 78 55 32 13 20 17 9 3  0KX 705 I GTP 706 I SO4 707 I
22 1.77 1.77 25.7 -1.47 -0.47 19.8 81 3 4 1 2 2 1 0  
23 1.37 1.56 48.8 -2.18 -0.83 18.0 88 3 2 4 0 0 0 0  
24 1.49 1.47 81.9 -2.29 -0.23 28.0 74 15 6 2 2 4 0 3  
25 1.21 2.42 117.0 -1.84 -0.18 24.0 77 19 8 3 7 8 1 1  GTP 706 M DTP 701 O
26 2.70 2.96 25.1 -1.29 -0.29 15.9 79 3 2 3 2 1 1 0  
27 1.57 1.78 45.9 -2.45 -0.79 24.5 83 4 2 3 0 0 0 0  
28 1.90 1.90 27.4 -1.47 -0.69 19.7 87 2 3 1 1 1 0 0  
29 1.82 1.83 28.0 -1.58 -0.67 20.6 87 2 3 1 1 1 0 0  
30 1.39 1.63 25.9 -1.98 -0.85 12.6 80 3 2 3 0 0 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer