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PDBsum entry 6tms

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Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6tms calculated with MOLE 2.0 PDB id
6tms
Pores calculated on whole structure Pores calculated excluding ligands

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9 pores, coloured by radius 7 pores, coloured by radius 7 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 2.25 45.0 -1.60 -0.54 21.0 80 5 6 5 5 0 1 0  
2 1.18 1.14 46.0 -2.74 -0.72 31.5 81 4 7 2 1 0 1 0  
3 2.46 2.47 84.6 -1.54 -0.74 21.2 85 4 10 1 2 0 0 0  
4 1.28 2.25 100.5 0.75 0.08 9.8 78 4 9 8 21 1 0 0  SO4 101 B
5 1.33 2.24 101.0 0.08 -0.15 13.0 81 5 10 7 13 1 0 0  SO4 101 B
6 1.42 1.60 110.3 0.08 -0.25 11.5 84 5 8 7 13 0 0 0  SO4 101 B
7 1.66 2.78 213.6 -1.85 -0.33 30.8 79 19 18 3 10 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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