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PDBsum entry 6t7c

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Top Page protein dna_rna Protein-protein interface(s) pores links
Pore analysis for: 6t7c calculated with MOLE 2.0 PDB id
6t7c
Pores calculated on whole structure Pores calculated excluding ligands

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14 pores, coloured by radius 14 pores, coloured by radius 14 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 3.26 3.29 30.1 -2.01 -0.54 26.6 77 4 0 0 1 0 0 0  DC 67 I DG 68 I DT 70 I DG 72 I DT 73 I DA 70 J D
A 71 J DT 72 J DC 74 J DC 75 J
2 2.97 3.38 30.9 -1.45 -0.57 16.8 86 4 0 1 2 0 0 0  DG 40 I DC 41 I DA 47 I DC 48 I DG 93 J DA 94 J D
A 102 J DA 103 J DC 104 J
3 2.14 2.14 35.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DT 52 I DC 53 I DT 54 I DA 55 I DA 56 I DG 93 J D
A 94 J DA 95 J
4 2.93 3.05 58.8 -1.04 -0.47 14.9 87 6 0 5 3 0 0 0  DT 88 I DC 90 I DT 91 I DT 92 I DC 101 I DA 102 I
DG 103 I DT 39 J DG 49 J DC 50 J DA 51 J DC 52 J
DA 53 J
5 2.75 2.75 64.2 -2.29 -0.53 26.5 77 8 0 0 0 1 0 0  DT 38 I DG 40 I DC 41 I DT 109 I DG 110 I DC 111
I DC 112 I DT 113 I DA 114 I DC 29 J DG 30 J DT
31 J DT 32 J DA 33 J DG 34 J DA 102 J DA 103 J DC
104 J DG 105 J
6 1.34 2.32 86.7 -1.57 -0.42 20.5 78 13 2 4 7 1 0 0  DT 27 I
7 2.76 2.76 86.9 -2.06 -0.54 23.1 85 9 0 3 2 1 0 0  DT 38 I DA 47 I DC 48 I DT 109 I DG 110 I DC 111
I DC 112 I DT 113 I DA 114 I DC 29 J DG 30 J DT
31 J DT 32 J DA 33 J DG 34 J DG 93 J DA 103 J DC
104 J DG 105 J
8 3.35 3.35 96.2 -1.91 -0.65 22.6 78 10 1 0 0 0 0 0  DT 27 I DT 28 I DG 36 I DT 38 I DG 40 I DC 41 I
DG 103 I DC 112 I DT 113 I DA 114 I DC 29 J DG 30
J DT 31 J DT 38 J DA 102 J DA 103 J DC 104 J DG
105 J DC 106 J DC 114 J DA 115 J DT 116 J
9 2.34 3.17 106.8 -1.90 -0.41 23.9 80 15 2 4 5 1 0 0  DT 27 I DG 71 I DT 73 I DG 103 I DA 70 J
10 1.20 2.72 113.2 -1.45 -0.41 18.4 81 13 2 7 9 2 0 0  DA 47 I DC 48 I DG 93 J DA 103 J
11 1.20 2.30 113.1 -1.61 -0.43 21.9 77 15 2 3 7 1 0 0  DT 38 I DG 40 I DC 41 I DC 29 J DA 102 J DA 103 J
DC 104 J DG 105 J
12 2.28 2.75 119.5 -1.74 -0.42 21.1 81 16 2 6 6 2 0 0  DA 47 I DC 48 I DG 71 I DT 73 I DA 70 J DG 93 J D
A 94 J DA 103 J
13 1.22 2.20 120.0 -1.27 -0.45 16.1 81 13 2 7 10 0 0 0  DG 71 I DT 73 I DA 70 J
14 2.36 2.75 124.0 -1.32 -0.33 16.6 84 11 2 12 7 4 1 0  DA 47 I DC 48 I DT 88 I DC 90 I DT 91 I DT 92 I
DC 101 I DG 49 J DC 50 J DA 51 J DC 52 J DA 53 J
DG 93 J DA 103 J

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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