PDBsum entry 6r8x

Tunnel analysis for: 6r8x calculated with

MOLE 2.0

PDB id

6r8x

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

6 tunnels, coloured by tunnel radius

6 tunnels, coloured by tunnel radius

6 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.38

1.55

20.3

-0.28

-0.22

6.0

78

2

1

3

2

1

2

1

2

1.35

1.52

22.9

-0.92

-0.18

10.5

74

2

0

2

2

1

2

1

3

1.30

2.71

17.6

-0.46

-0.42

12.0

77

1

3

2

3

1

1

0

4

1.32

2.73

24.8

-0.61

-0.45

10.2

85

1

1

3

4

1

1

0

5

1.32

1.32

15.3

-0.23

-0.33

5.7

87

1

0

1

1

1

0

0

6

1.36

2.93

15.3

-1.78

-0.39

12.1

89

2

1

5

1

1

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.