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PDBsum entry 6qwf

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Top Page protein dna_rna ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6qwf calculated with MOLE 2.0 PDB id
6qwf
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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3 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.24 1.27 26.2 -0.27 0.21 6.1 76 3 0 4 2 4 0 1  GOL 301 A
2 1.25 1.26 31.7 0.16 0.24 6.3 79 2 1 4 6 3 0 0  
3 1.25 1.26 35.9 -0.82 0.09 11.9 77 3 2 4 6 3 0 0  DC 7 C
4 1.25 1.26 44.9 -0.33 0.18 6.7 78 4 1 5 5 3 0 0  DT 27 D DC 28 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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