PDBsum entry 6pij Go to PDB code:  Pore analysis for: 6pij calculated with MOLE 2.0 PDB id 6pij Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   17 pores, coloured by radius 17 pores, coloured by radius 17 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.36 2.37 25.5 -1.84 -0.70 17.7 94 2 2 5 1 0 0 0  G 41 1 A 44 1 A 45 1 A 59 1 2 1.46 1.64 25.8 -0.75 -0.16 12.7 79 5 0 2 3 1 0 0  G 41 1 A 45 1 A 55 1 G 56 1 3 1.40 2.31 29.3 -0.53 -0.14 17.5 82 3 2 2 4 1 0 0  DG 57 2 4 2.05 3.19 37.3 -2.25 -0.47 23.0 78 2 3 1 0 2 2 0   5 1.18 1.88 42.9 0.48 0.03 9.9 79 4 1 2 6 2 0 0  C 50 1 G 51 1 A 52 1 G 53 1 U 54 1 A 55 1 G 56 1 6 2.50 2.50 47.1 -2.06 -0.86 24.5 81 1 3 1 0 0 0 0  DT 48 2 DG 49 2 DT 50 2 DA 51 2 DA 52 2 DG 53 2 DG 54 2 DC 55 2 DG 56 2 DG 57 2 DC 1 3 DC 2 3 DG 3 3 DC 5 3 DT 6 3 7 1.28 1.65 55.1 -0.73 -0.12 17.8 80 5 3 4 6 2 0 0  A 45 1 8 1.45 1.48 56.6 -2.10 -0.55 25.0 76 6 3 3 2 3 1 0  U 10 1 A 11 1 C 12 1 9 1.27 1.27 68.2 -1.32 -0.36 22.9 81 7 4 3 3 2 1 0  C 8 1 DA 51 2 DA 52 2 DG 53 2 DG 54 2 DC 55 2 DG 56 2 DG 57 2 DC 1 3 DG 3 3 10 1.16 1.84 79.0 -2.20 -0.57 23.1 82 6 4 5 0 3 2 0  C 28 1 A 29 1 U 30 1 C 33 1 U 34 1 DA 31 2 DT 32 2 11 1.19 1.19 94.5 -1.01 -0.36 17.9 83 10 4 3 6 3 1 1  A 4 1 U 5 1 A 6 1 A 7 1 DG 56 2 DG 57 2 12 1.20 1.43 101.3 -0.98 -0.34 18.2 80 11 5 3 8 5 1 1  A 7 1 C 8 1 DA 52 2 13 1.20 1.17 131.0 -0.75 -0.41 14.4 84 9 5 5 7 4 0 1  A 7 1 DT 48 2 DG 49 2 DT 50 2 DA 51 2 DA 52 2 DG 53 2 DC 2 3 DC 5 3 DT 6 3 14 1.25 2.43 145.1 -0.35 0.07 17.3 81 8 5 5 19 5 2 0  G 41 1 A 45 1 15 1.05 2.05 209.8 -1.53 -0.38 17.5 82 15 9 19 8 11 3 1  G 40 1 G 41 1 U 42 1 G 43 1 A 44 1 A 45 1 16 2.51 3.81 280.7 -1.50 -0.53 13.3 90 8 7 24 12 2 2 0  C 33 1 U 34 1 A 39 1 G 40 1 G 41 1 U 42 1 G 43 1 A 44 1 A 45 1 DA 31 2 DC 43 2 DG 44 2 DT 45 2 17 1.32 1.30 326.9 -1.44 -0.55 12.7 91 12 6 26 14 3 2 0  C 33 1 U 34 1 A 39 1 G 40 1 G 41 1 U 42 1 G 43 1 A 44 1 A 45 1 DA 31 2 DC 47 2 DT 48 2 DG 49 2 DT 50 2 Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.