PDBsum entry 6oop

Tunnel analysis for: 6oop calculated with

MOLE 2.0

PDB id

6oop

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

2 tunnels, coloured by tunnel radius

8 tunnels, coloured by tunnel radius

8 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.24

1.49

37.7

0.49

0.04

3.8

86

0

1

3

9

3

2

0

KHJ 501 A

2

1.26

1.56

39.5

0.45

-0.04

5.2

87

0

1

3

9

1

2

0

KHJ 501 A

3

1.22

1.49

44.3

-0.06

0.12

8.3

76

2

2

4

7

5

2

1

KHJ 501 A

4

1.23

1.49

45.7

-0.03

0.00

7.2

84

1

1

3

7

3

2

0

KHJ 501 A

5

1.25

1.56

46.1

-0.16

0.05

10.0

78

2

2

4

7

3

2

1

KHJ 501 A

6

1.25

1.56

47.5

-0.12

-0.08

9.0

88

1

1

3

8

1

2

0

KHJ 501 A

7

1.23

1.43

59.6

-1.09

-0.32

11.9

80

2

5

7

6

4

3

0

KHJ 501 A

8

1.25

1.43

61.4

-1.18

-0.39

13.3

82

2

5

7

6

2

3

0

KHJ 501 A

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.