 |
PDBsum entry 6ofh
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 6ofh calculated with MOLE 2.0
|
PDB id
|
|
|
|
6ofh
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
20 pores,
coloured by radius |
 |
20 pores,
coloured by radius
|
20 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
3.08 |
3.87 |
35.2 |
-2.08 |
-0.45 |
11.4 |
90 |
 |
2 |
0 |
9 |
3 |
0 |
1 |
0 |
 |
|
 |
 |
2 |
 |
3.55 |
4.59 |
49.0 |
-2.69 |
-0.56 |
24.1 |
85 |
5 |
3 |
11 |
3 |
0 |
1 |
0 |
|
 |
3 |
 |
2.96 |
2.96 |
57.2 |
0.77 |
0.36 |
13.2 |
77 |
3 |
4 |
2 |
12 |
6 |
0 |
0 |
|
 |
4 |
 |
2.16 |
4.73 |
58.3 |
-0.90 |
-0.03 |
8.7 |
83 |
3 |
1 |
9 |
6 |
2 |
1 |
0 |
|
 |
5 |
 |
2.90 |
3.11 |
58.5 |
0.55 |
0.23 |
9.9 |
77 |
3 |
4 |
2 |
11 |
5 |
0 |
0 |
|
 |
6 |
 |
2.88 |
3.22 |
60.0 |
0.83 |
0.30 |
10.2 |
77 |
3 |
4 |
2 |
12 |
6 |
0 |
0 |
|
 |
7 |
 |
2.86 |
3.08 |
61.6 |
-0.73 |
-0.03 |
19.8 |
78 |
5 |
5 |
3 |
11 |
5 |
0 |
0 |
|
 |
8 |
 |
3.04 |
3.20 |
64.1 |
-0.57 |
-0.04 |
18.2 |
78 |
6 |
5 |
3 |
12 |
6 |
0 |
0 |
|
 |
9 |
 |
3.05 |
3.23 |
65.3 |
0.16 |
0.12 |
12.7 |
78 |
5 |
5 |
3 |
12 |
6 |
0 |
0 |
|
 |
10 |
 |
2.88 |
3.10 |
65.9 |
-0.21 |
0.05 |
14.3 |
78 |
6 |
5 |
3 |
11 |
5 |
0 |
0 |
|
 |
11 |
 |
2.88 |
3.09 |
70.0 |
-0.79 |
-0.06 |
17.6 |
78 |
8 |
6 |
4 |
11 |
5 |
0 |
0 |
|
 |
12 |
 |
2.97 |
3.27 |
70.4 |
-0.87 |
-0.09 |
20.6 |
78 |
8 |
6 |
4 |
12 |
6 |
0 |
0 |
|
 |
13 |
 |
3.57 |
4.60 |
86.3 |
-1.64 |
-0.30 |
17.0 |
82 |
5 |
4 |
12 |
8 |
1 |
2 |
0 |
|
 |
14 |
 |
3.57 |
4.59 |
87.4 |
-1.61 |
-0.29 |
13.9 |
86 |
4 |
5 |
17 |
6 |
1 |
2 |
0 |
|
 |
15 |
 |
3.24 |
3.41 |
88.5 |
-2.95 |
-0.55 |
31.4 |
81 |
22 |
12 |
14 |
6 |
3 |
0 |
0 |
|
 |
16 |
 |
2.94 |
2.97 |
92.3 |
-3.27 |
-0.61 |
33.8 |
81 |
24 |
13 |
15 |
6 |
3 |
0 |
0 |
|
 |
17 |
 |
3.11 |
3.21 |
93.0 |
-1.01 |
-0.02 |
22.5 |
77 |
4 |
4 |
4 |
11 |
7 |
0 |
0 |
|
 |
18 |
 |
3.09 |
3.26 |
94.1 |
-3.09 |
-0.59 |
32.0 |
80 |
26 |
14 |
14 |
6 |
3 |
0 |
0 |
|
 |
19 |
 |
3.20 |
3.35 |
98.7 |
-3.33 |
-0.64 |
33.3 |
80 |
28 |
15 |
15 |
5 |
2 |
0 |
0 |
|
 |
20 |
 |
3.16 |
3.27 |
103.1 |
-3.27 |
-0.62 |
34.0 |
80 |
30 |
16 |
16 |
6 |
3 |
0 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |