spacer
spacer

PDBsum entry 6o8h

Go to PDB code: 
Top Page protein dna_rna ligands metals pores links
Pore analysis for: 6o8h calculated with MOLE 2.0 PDB id
6o8h
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.32 1.46 28.0 -0.48 -0.25 12.6 80 3 0 1 4 0 1 0  DC 4 B DC 5 B DG 12 C DG 13 C DA 14 C DG 15 C
2 1.89 1.89 47.9 -1.07 -0.52 13.3 87 7 1 3 2 0 1 0  DT 7 B DC 8 B DG 9 B DC 10 B DC 6 C DT 11 C DG 12
C DG 13 C DA 14 C
3 1.35 1.46 48.8 -0.53 -0.37 9.2 85 4 0 2 5 0 0 0  DC 4 B DC 5 B DA 6 B DT 7 B DC 8 B DG 9 B DC 10 B
DC 6 C DT 11 C DG 12 C DG 13 C DG 15 C
4 1.89 2.10 60.4 -1.14 -0.49 11.8 89 3 4 5 3 1 0 0  DT 7 B DG 9 B DC 10 B DG 11 B DC 12 B DA 4 C DG 5
C DC 6 C
5 1.98 2.11 90.7 -1.01 -0.43 11.2 88 7 3 6 5 1 1 0  DT 7 B DC 8 B DG 9 B DC 10 B DG 11 B DC 12 B DA 4
C DG 5 C DT 11 C DG 12 C DG 13 C DA 14 C

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer