spacer
spacer

PDBsum entry 6nq0

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) pores links
Pore analysis for: 6nq0 calculated with MOLE 2.0 PDB id
6nq0
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
15 pores, coloured by radius 15 pores, coloured by radius 15 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 2.02 3.15 27.0 -2.80 -0.49 22.4 80 6 0 5 0 2 0 0  EUJ 1000 A
2 1.99 3.32 33.2 -2.82 -0.64 20.5 88 5 0 7 0 1 0 0  EUJ 1000 A
3 1.28 1.39 35.6 0.18 0.21 8.0 84 2 1 2 11 2 0 0  
4 2.57 4.04 38.1 -1.97 -0.03 34.0 77 4 1 2 4 1 0 0  
5 1.28 1.39 42.5 1.14 0.35 4.3 82 1 1 2 16 2 0 0  
6 1.31 1.52 53.4 2.30 0.71 0.8 78 0 0 3 12 4 2 0  
7 1.27 1.38 55.1 1.65 0.47 1.2 80 0 0 2 22 2 0 0  
8 1.21 1.98 61.2 -0.50 0.08 16.0 78 3 4 3 11 5 1 0  
9 1.16 1.36 80.2 1.20 0.45 6.8 76 2 2 4 13 5 2 0  
10 2.14 2.38 80.9 -1.02 -0.12 14.7 76 3 6 6 8 3 4 0  
11 2.38 4.46 90.2 -1.29 -0.15 16.2 80 5 4 6 5 3 2 0  
12 1.86 2.01 114.0 -2.54 -0.38 25.5 81 10 5 7 6 2 0 0  
13 1.32 1.50 117.8 0.50 0.35 13.9 79 6 4 5 17 4 1 0  
14 1.31 1.51 120.4 0.04 0.14 13.2 79 6 3 6 15 4 1 0  
15 1.24 2.11 121.8 0.27 0.26 13.5 79 8 3 6 11 4 0 0  EUJ 1000 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer