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PDBsum entry 6j6h
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Pore analysis for: 6j6h calculated with MOLE 2.0 PDB id
6j6h
Pores calculated on whole structure Pores calculated excluding ligands
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35 pores, coloured by radius 38 pores, coloured by radius 38 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.98 1.98 42.1 -0.65 -0.82 7.0 96 0 1 0 0 0 0 0  A 126 L A 127 L G 143 L G 144 L G 145 L A 146 L A
147 L G 148 L A 149 L G 150 L A 1082 L A 1083 L G
1085 L U 1086 L G 1089 L U 1159 L C 1160 L
2 2.22 2.37 59.1 -1.22 -0.20 20.5 79 7 4 4 8 1 0 0  
3 3.52 3.52 96.1 -0.53 -0.48 10.7 89 3 2 0 4 0 1 0  A 126 L G 1089 L A 1090 L G 1091 L A 1092 L C
1093 L G 1094 L U 1095 L C 1096 L U 1131 L U 1136
L G 1139 L U 1140 L C 1141 L G 1142 L C 1143 L U
1145 L G 1146 L U 1148 L G 1149 L U 1150 L U 1151
L C 1155 L U 1159 L
4 1.33 1.33 104.9 -1.28 -0.50 16.3 83 8 1 3 2 0 1 0  G 145 L A 146 L A 147 L G 148 L A 149 L G 150 L A
1083 L G 1085 L U 1086 L C 1096 L U 1131 L U 1136
L U 1137 L A 1147 L U 1148 L
5 1.65 2.45 117.5 -1.85 -0.52 22.3 82 0 0 0 0 0 0 0  A 2 D G 3 D C 4 D G 154 D U 155 D G 156 D C 164 D
A 165 D U 166 D
6 2.54 2.72 119.2 -0.94 -0.10 16.0 78 8 6 3 8 6 2 0  G 1114 L U 1131 L U 1136 L U 1137 L
7 1.34 1.47 145.5 -1.72 -0.49 17.6 81 12 5 9 4 4 1 0  G 27 D G 32 D U 33 D C 34 D U 123 D C 124 D C 125
D A 126 D U 127 D U 3 E
8 2.80 2.80 155.1 -1.33 -0.33 17.4 80 11 7 7 7 6 1 0  A 126 L A 127 L G 143 L G 144 L G 145 L G 1089 L
C 1096 L G 1114 L U 1137 L A 1147 L U 1148 L G
1149 L U 1159 L
9 1.30 1.30 166.9 -1.29 -0.30 17.4 80 10 6 6 7 6 1 0  G 145 L A 146 L A 147 L G 148 L A 149 L G 150 L A
1083 L G 1085 L U 1086 L C 1096 L G 1114 L U 1137
L A 1147 L U 1148 L
10 1.38 1.37 174.1 0.09 -0.04 10.0 81 8 9 11 20 10 1 1  
11 2.09 3.31 176.8 -1.40 -0.64 16.6 85 11 10 13 7 1 3 0  G 0 B G 1 B U 2 B A 3 B U 4 B G 5 B U 6 B U 7 B C
8 B U 9 B A 10 B G 13 B C 14 B A 266 B A 40 E A
42 E C 43 E A 44 E A 45 E U 46 E A 49 E G 50 E C
58 E A 59 E U 28 L C 29 L
12 1.86 2.30 190.6 -1.93 -0.61 23.3 80 15 11 9 3 5 2 0  G 27 D G 29 D A 30 D G 31 D G 69 D A 70 D A 71 D
G 117 D U 118 D C 124 D C 125 D A 126 D U 127 D C
163 D U 3 E
13 1.97 2.04 196.3 -1.77 -0.57 17.6 80 14 5 9 2 4 0 0  A 15 D A 18 D A 19 D U 20 D G 21 D G 27 D G 29 D
A 30 D G 31 D A 68 D G 69 D A 70 D A 71 D G 117 D
U 118 D C 124 D C 125 D A 126 D U 127 D A 151 D C
152 D U 153 D G 154 D U 160 D U 3 E
14 1.25 1.26 205.5 -0.84 -0.34 15.7 85 13 11 9 20 1 6 0  C 111 L U 113 L U 114 L U 115 L U 116 L U 117 L U
118 L G 119 L G 120 L C 121 L G 1094 L U 1095 L C
1096 L U 1131 L U 1136 L G 1149 L U 1150 L U 1151
L
15 1.46 1.61 231.5 -1.70 -0.46 22.0 83 19 19 14 10 2 6 0  
16 1.33 3.17 255.6 -1.75 -0.39 19.6 82 0 0 0 0 0 0 0  A 2 D G 3 D C 4 D G 154 D U 155 D G 156 D C 164 D
A 165 D U 166 D
17 1.96 2.27 249.7 -1.89 -0.60 22.4 81 21 18 14 6 5 4 0  U 9 B A 10 B G 13 B C 14 B A 30 D G 31 D G 32 D C
34 D A 35 D A 36 D C 37 D G 69 D A 70 D A 71 D G
115 D U 116 D G 117 D U 118 D C 163 D A 40 E A 41
E A 42 E
18 1.74 1.73 251.3 -1.87 -0.59 19.5 81 24 12 14 5 4 3 0  U 9 B A 10 B G 13 B C 14 B A 15 D A 18 D A 19 D U
20 D G 21 D A 30 D G 31 D G 32 D C 34 D A 35 D A
36 D C 37 D A 68 D G 69 D A 70 D A 71 D G 115 D U
116 D G 117 D U 118 D A 151 D C 152 D U 153 D G
154 D U 160 D A 40 E A 41 E A 42 E
19 1.56 2.79 255.5 -1.86 -0.55 19.6 80 22 13 14 4 6 3 0  U 9 B A 10 B G 13 B C 14 B G 27 D G 29 D A 30 D G
31 D G 32 D C 34 D A 35 D A 36 D C 37 D G 115 D U
116 D G 117 D U 118 D C 124 D C 125 D A 126 D U
127 D U 3 E A 40 E A 41 E A 42 E
20 1.75 2.61 261.1 -1.90 -0.53 23.5 80 25 18 13 9 7 3 0  A 30 D G 31 D G 32 D C 34 D A 35 D A 36 D C 37 D
G 69 D A 70 D A 71 D G 115 D U 116 D G 117 D U
118 D C 163 D A 40 E A 41 E
21 1.82 1.90 278.9 -1.48 -0.58 17.5 80 13 17 13 6 7 1 0  G 5 B U 6 B U 7 B C 8 B U 9 B A 10 B G 13 B C 14
B A 40 E A 42 E C 43 E A 44 E A 82 E A 83 E C 84
E G 86 E U 87 E U 88 E U 89 E G 96 E A 97 E G 98
E A 99 E U 100 E U 101 E U 102 E A 103 E G 3 L A
5 L U 6 L C 7 L C 9 L
22 1.61 1.97 276.2 -1.65 -0.52 20.9 78 19 17 12 10 9 1 0  A 83 E C 84 E G 86 E U 87 E U 88 E U 89 E G 96 E
A 97 E G 98 E A 99 E U 100 E U 101 E U 102 E A
103 E G 3 L A 5 L U 6 L C 7 L C 9 L
23 1.76 2.60 266.8 -1.77 -0.51 20.0 79 24 11 12 8 6 2 0  A 15 D A 18 D A 19 D U 20 D G 21 D A 30 D G 31 D
G 32 D C 34 D A 35 D A 36 D C 37 D A 68 D G 69 D
A 70 D A 71 D G 115 D U 116 D G 117 D U 118 D A
151 D C 152 D U 153 D G 154 D U 160 D A 40 E A 41
E
24 1.23 2.00 276.6 -0.78 -0.25 15.5 84 17 9 9 16 8 1 0  G 27 D G 29 D A 30 D G 31 D G 69 D A 70 D A 71 D
G 117 D U 118 D C 124 D C 125 D A 126 D U 127 D C
163 D A 165 D U 166 D U 3 E
25 2.22 3.43 273.8 -1.48 -0.56 15.3 82 23 10 13 9 4 4 0  A 15 D A 18 D A 19 D U 20 D G 21 D A 38 D U 39 D
C 40 D A 41 D A 42 D C 46 D U 47 D A 68 D G 69 D
A 70 D A 71 D C 90 D U 91 D U 96 D U 97 D A 105 D
A 106 D C 107 D C 108 D G 117 D U 118 D A 151 D C
152 D U 153 D G 154 D U 160 D C 58 E A 59 E G 60
E A 27 L U 28 L C 29 L
26 1.33 3.28 300.2 -1.66 -0.46 20.1 80 22 16 12 8 7 5 0  U 9 B A 10 B G 13 B C 14 B C 37 D A 38 D C 40 D A
42 D C 107 D C 108 D A 40 E A 41 E A 42 E
27 2.03 2.71 293.1 -1.43 -0.56 15.0 82 21 11 13 8 6 4 0  G 27 D G 28 D G 29 D A 30 D G 31 D A 38 D U 39 D
C 40 D A 41 D A 42 D C 46 D U 47 D G 69 D A 70 D
A 71 D C 90 D U 91 D U 96 D U 97 D A 105 D A 106
D C 107 D C 108 D G 117 D U 118 D C 124 D C 125 D
A 126 D U 127 D U 3 E C 58 E A 59 E G 60 E A 27 L
U 28 L C 29 L
28 1.30 3.23 295.7 -1.49 -0.50 17.9 80 18 10 7 5 5 2 0  G 27 D G 29 D A 30 D G 31 D A 38 D U 39 D C 40 D
A 41 D A 42 D C 46 D U 47 D G 69 D A 70 D A 71 D
C 107 D C 108 D G 117 D U 118 D C 124 D C 125 D A
126 D U 127 D U 3 E
29 1.31 3.30 311.5 -1.66 -0.41 21.1 79 26 15 11 12 9 4 0  C 37 D A 38 D C 40 D A 42 D C 107 D C 108 D A 40
E A 41 E
30 1.68 1.86 346.2 -1.59 -0.53 18.0 84 28 16 20 15 4 6 0  G 27 D G 29 D A 30 D G 31 D G 32 D C 34 D A 35 D
A 36 D C 37 D G 115 D U 116 D G 117 D U 118 D C
124 D C 125 D A 126 D U 127 D U 3 E
31 1.53 1.53 45.6 0.53 0.05 4.5 86 1 1 2 7 0 3 0  
32 1.89 1.97 66.8 -1.41 -0.48 18.9 89 10 4 8 9 0 0 0  
33 2.14 2.64 83.4 -2.51 -0.62 24.9 88 13 5 12 2 1 1 0  
34 1.91 1.98 103.3 -0.18 -0.18 13.2 85 7 6 6 17 0 1 0  
35 1.51 1.52 123.6 0.59 -0.01 5.1 82 2 2 4 22 3 3 0  
36 1.52 1.51 136.9 -0.02 -0.14 7.1 79 4 2 7 15 5 3 0  
37 1.35 1.53 44.2 0.17 -0.16 11.4 86 3 5 4 11 0 0 0  
38 1.50 1.66 28.8 -0.36 0.04 15.7 77 3 2 2 4 3 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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