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PDBsum entry 6is7

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Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 6is7 calculated with MOLE 2.0 PDB id
6is7
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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7 tunnels, coloured by tunnel radius 7 tunnels, coloured by tunnel radius 7 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.48 1.52 37.2 -1.56 -0.56 20.5 79 4 2 0 1 1 0 0  DT -3 C DT -
2 C DC 0 C DC 1 C DT 6 D DA 7 D DA 8 D DG 9 D DC
10 D DA 11 D DG 12 D
2 1.41 1.69 37.5 -1.41 -0.58 19.1 79 4 2 0 1 1 0 0  DT -3 C DT -
2 C DT 6 D DA 7 D DA 8 D DG 9 D DC 10 D DA 11 D
DG 12 D
3 1.47 1.52 39.2 -1.52 -0.52 21.2 75 4 2 0 1 1 0 0  DG -5 C DC -4 C DT -3 C DT -
2 C DC 0 C DC 1 C DT 6 D DA 7 D DA 8 D DG 9 D DC
10 D DA 11 D DG 12 D DT 13 D
4 1.41 1.64 39.6 -1.41 -0.54 19.9 75 4 2 0 1 1 0 0  DG -5 C DC -4 C DT -3 C DT -
2 C DT 6 D DA 7 D DA 8 D DG 9 D DC 10 D DA 11 D
DG 12 D DT 13 D
5 1.43 1.43 39.0 -1.37 -0.56 18.7 79 4 2 0 1 1 0 0  DC -4 E DT -3 E DT -
2 E DC 0 E DT 6 F DA 7 F DA 8 F DG 9 F DC 10 F DA
11 F DG 12 F
6 2.32 2.32 20.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  DG -10 C DG -9 C DA -8 C DC -7 C DT -6 C DG -
5 C DC 14 D DC 15 D DG 16 D
7 1.12 1.12 15.4 -0.40 -0.36 9.9 77 2 0 0 2 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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