spacer
spacer

PDBsum entry 6hw9
Go to PDB code: 
Top Page protein ligands metals Protein-protein interface(s) tunnels links
Tunnel analysis for: 6hw9 calculated with MOLE 2.0 PDB id
6hw9
Tunnels calculated on whole structure Tunnels calculated excluding ligands
View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
32 tunnels, coloured by tunnel radius 32 tunnels, coloured by tunnel radius 32 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.39 1.55 74.9 -0.62 -0.10 11.8 79 6 2 5 8 7 1 2  GWK 301 V MES 302 V
2 1.37 1.51 107.4 -0.88 -0.29 10.4 84 7 2 10 8 8 0 0  GWK 301 K MG 303 K MES 304 K GWK 301 V MES 302 V
3 1.38 1.72 113.9 -0.98 -0.24 12.6 82 7 5 9 10 8 0 0  GWK 301 V MES 302 V
4 1.38 1.52 115.9 -1.01 -0.21 13.8 82 7 5 9 10 8 0 0  GWK 301 V MES 302 V
5 1.38 1.54 123.9 -1.08 -0.32 9.9 83 7 3 12 8 10 0 0  GWK 301 V MES 302 V GWK 301 Y MG 302 Y MES 303 Y
6 1.38 1.53 137.6 -2.01 -0.29 23.1 82 13 5 9 8 7 1 0  GWK 301 V MES 302 V
7 1.41 1.58 139.9 -1.49 -0.22 17.2 81 13 4 12 10 10 0 1  GWK 301 V MES 302 V
8 1.39 1.74 139.7 -1.72 -0.26 19.8 82 10 3 11 8 9 0 0  GWK 301 V MES 302 V
9 1.30 1.45 145.2 -1.88 -0.22 21.2 83 13 2 13 6 11 0 0  GWK 301 V MES 302 V
10 1.40 1.59 147.4 -1.95 -0.30 22.0 80 14 5 9 6 10 0 0  GWK 301 V MES 302 V
11 1.40 1.72 149.6 -1.87 -0.26 20.5 81 12 5 13 10 8 1 0  GWK 301 V MES 302 V
12 1.39 1.73 150.0 -1.79 -0.31 19.9 84 12 6 12 7 7 0 0  GWK 301 V MES 302 V
13 1.41 1.59 150.8 -2.00 -0.30 24.0 81 16 5 11 7 11 1 0  GWK 301 V MES 302 V
14 1.39 1.74 152.1 -1.72 -0.26 20.2 82 13 7 12 7 11 0 0  GWK 301 V MES 302 V
15 1.40 1.58 152.8 -2.11 -0.36 22.4 83 15 6 11 8 7 0 0  GWK 301 V MES 302 V
16 1.43 1.59 153.3 -1.59 -0.26 17.1 82 14 4 13 10 10 1 1  GWK 301 V MES 302 V
17 1.41 1.58 153.2 -1.81 -0.33 19.0 83 11 3 12 8 9 0 0  GWK 301 V MES 302 V
18 1.40 1.58 155.4 -1.48 -0.12 18.1 78 11 5 10 10 11 2 0  GWK 301 V MES 302 V
19 1.33 1.40 156.1 -1.18 -0.16 16.1 79 14 3 11 12 9 1 0  GWK 301 V MES 302 V
20 1.18 1.20 155.5 -1.77 -0.31 19.7 82 12 6 13 11 9 0 0  GWK 301 V MES 302 V
21 1.31 1.46 157.2 -1.92 -0.27 20.2 84 14 2 14 6 10 0 0  GWK 301 V MES 302 V
22 1.42 1.58 159.3 -1.86 -0.35 18.9 85 12 6 13 7 7 0 0  GWK 301 V MES 302 V
23 1.42 1.57 160.4 -2.01 -0.35 20.7 81 15 5 10 6 10 0 0  GWK 301 V MES 302 V
24 1.39 1.78 162.7 -1.99 -0.33 22.5 83 17 5 12 7 10 1 0  GWK 301 V MES 302 V
25 1.39 1.78 163.4 -1.79 -0.29 19.6 83 14 5 13 8 11 0 0  GWK 301 V MES 302 V
26 1.45 1.67 162.6 -1.89 -0.29 19.3 82 14 5 14 10 8 1 0  GWK 301 V MES 302 V
27 1.39 1.80 164.3 -1.66 -0.23 18.9 81 15 4 11 8 10 1 0  GWK 301 V MES 302 V
28 1.19 1.16 164.9 -1.21 -0.19 14.9 81 13 2 13 10 10 1 0  GWK 301 V MES 302 V
29 1.18 1.74 168.8 -1.28 -0.23 15.8 81 14 4 12 12 9 1 0  GWK 301 V MES 302 V
30 1.18 1.98 22.7 -0.63 -0.09 2.9 74 0 1 2 1 2 2 0  
31 1.15 2.01 22.8 -0.70 -0.13 2.9 78 0 1 3 1 2 2 0  
32 1.51 1.51 19.9 -0.42 -0.51 5.3 72 0 1 1 2 1 1 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer