PDBsum entry 6hu0

Tunnel analysis for: 6hu0 calculated with

MOLE 2.0

PDB id

6hu0

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

View options

MOLEonline 2.0 manipulation
and
visualization
with HETATM:

without HETATM:

11 tunnels, coloured by tunnel radius

15 tunnels, coloured by tunnel radius

15 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.62

1.68

16.8

-1.38

0.32

23.3

71

5

2

1

0

3

0

1

T86 504 B

2

1.23

1.23

28.6

-1.00

-0.48

12.7

74

4

2

0

2

2

2

0

DMF 508 B

3

1.22

1.22

29.6

-0.69

-0.54

6.5

79

1

2

3

3

2

1

0

4

1.21

1.22

42.8

-1.20

-0.54

9.8

77

2

3

5

3

3

3

0

GOL 512 A GOL 514 A

5

1.52

1.69

19.4

-0.36

-0.54

6.5

89

1

1

2

2

0

1

0

6

1.63

1.82

19.9

-1.05

-0.46

9.7

77

2

2

1

2

1

2

0

7

1.50

1.69

27.5

-0.89

-0.57

7.6

81

1

2

3

3

1

1

0

DMF 516 C GOL 523 C

8

1.53

1.69

41.2

-1.37

-0.55

11.9

78

2

3

5

3

2

3

0

GOL 510 D

9

1.45

1.45

15.9

-0.92

0.01

13.8

86

1

1

1

2

1

1

0

DMF 507 A

10

1.44

1.44

18.0

-0.79

0.09

12.6

87

2

1

1

2

1

0

0

DMF 507 A

11

1.14

2.59

15.5

2.33

0.67

0.9

71

0

0

1

5

2

1

0

12

1.16

2.58

15.8

2.38

0.74

0.9

71

0

0

1

5

2

1

0

13

1.30

1.57

15.2

-0.12

0.07

19.0

81

2

1

1

6

1

0

0

14

1.23

1.46

15.1

1.07

0.15

5.5

83

1

1

0

6

1

0

0

DMF 507 B

15

1.23

1.45

15.6

0.83

0.01

6.8

81

1

1

0

6

1

1

0

DMF 507 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.