spacer
spacer

PDBsum entry 6hpv

Go to PDB code: 
Top Page protein ligands links
Hydrolase inhibitor PDB id
6hpv
Contents
Protein chain
299 a.a.
Ligands
NAG ×2
ACT
Waters ×85

References listed in PDB file
Key reference
Title Structure of mammalian plasma fetuin-B and its mechanism of selective metallopeptidase inhibition.
Authors A.Cuppari, H.Körschgen, D.Fahrenkamp, C.Schmitz, T.Guevara, K.Karmilin, M.Kuske, M.Olf, E.Dietzel, I.Yiallouros, D.De sanctis, T.Goulas, R.Weiskirchen, W.Jahnen-Dechent, J.Floehr, W.Stoecker, L.Jovine, F.X.Gomis-Rüth.
Ref. IUCrJ, 2019, 6, 317-330. [DOI no: 10.1107/S2052252519001568]
PubMed id 30867929
Abstract
Mammalian fetuin-A and fetuin-B are abundant serum proteins with pleiotropic functions. Fetuin-B is a highly selective and potent inhibitor of metallo-peptidases (MPs) of the astacin family, which includes ovastacin in mammals. By inhibiting ovastacin, fetuin-B is essential for female fertility. The crystal structure of fetuin-B was determined unbound and in complex with archetypal astacin, and it was found that the inhibitor has tandem cystatin-type modules (CY1 and CY2). They are connected by an exposed linker with a rigid, disulfide-linked 'CPDCP-trunk', and are followed by a C-terminal region (CTR) with little regular secondary structure. The CPDCP-trunk and a hairpin of CY2 form a bipartite wedge, which slots into the active-site cleft of the MP. These elements occupy the nonprimed and primed sides of the cleft, respectively, but spare the specificity pocket so that the inhibitor is not cleaved. The aspartate in the trunk blocks the catalytic zinc of astacin, while the CY2 hairpin binds through a QWVXGP motif. The CY1 module assists in structural integrity and the CTR is not involved in inhibition, as verified by in vitro studies using a cohort of mutants and variants. Overall, the inhibition conforms to a novel 'raised-elephant-trunk' mechanism for MPs, which is reminiscent of single-domain cystatins that target cysteine peptidases. Over 200 sequences from vertebrates have been annotated as fetuin-B, underpinning its ubiquity and physiological relevance; accordingly, sequences with conserved CPDCP- and QWVXGP-derived motifs have been found from mammals to cartilaginous fishes. Thus, the raised-elephant-trunk mechanism is likely to be generally valid for the inhibition of astacins by orthologs of fetuin-B.
Secondary reference #1
Title Fetuin-B, A second member of the fetuin family in mammals.
Authors E.Olivier, E.Soury, P.Ruminy, A.Husson, F.Parmentier, M.Daveau, J.P.Salier.
Ref. Biochem J, 2000, 350, 589-597.
PubMed id 10947975
Abstract
Secondary reference #2
Title Tissue distribution and activity testing suggest a similar but not identical function of fetuin-B and fetuin-A.
Authors B.Denecke, S.Gräber, C.Schäfer, A.Heiss, M.Wöltje, W.Jahnen-Dechent.
Ref. Biochem J, 2003, 376, 135-145. [DOI no: 10.1042/BJ20030676]
PubMed id 12943536
Abstract
Secondary reference #3
Title Fetuin-B, A liver-Derived plasma protein is essential for fertilization.
Authors E.Dietzel, J.Wessling, J.Floehr, C.Schäfer, S.Ensslen, B.Denecke, B.Rösing, J.Neulen, T.Veitinger, M.Spehr, T.Tropartz, R.Tolba, T.Renné, A.Egert, H.Schorle, Y.Gottenbusch, A.Hildebrand, I.Yiallouros, W.Stöcker, R.Weiskirchen, W.Jahnen-Dechent.
Ref. Dev Cell, 2013, 25, 106-112. [DOI no: 10.1016/j.devcel.2013.03.001]
PubMed id 23562279
Abstract
Secondary reference #4
Title Mammalian gamete fusion depends on the inhibition of ovastacin by fetuin-B.
Authors W.Stöcker, K.Karmilin, A.Hildebrand, H.Westphal, I.Yiallouros, R.Weiskirchen, E.Dietzel, J.Floehr, W.Jahnen-Dechent.
Ref. Biol Chem, 2014, 395, 1195-1199. [DOI no: 10.1515/hsz-2014-0189]
PubMed id 25205729
Abstract
Secondary reference #5
Title Fetuin b is a secreted hepatocyte factor linking steatosis to impaired glucose metabolism.
Authors R.C.Meex, A.J.Hoy, A.Morris, R.D.Brown, J.C.Lo, M.Burke, R.J.Goode, B.A.Kingwell, M.J.Kraakman, M.A.Febbraio, J.W.Greve, S.S.Rensen, M.P.Molloy, G.I.Lancaster, C.R.Bruce, M.J.Watt.
Ref. Cell Metab, 2015, 22, 1078-1089. [DOI no: 10.1016/j.cmet.2015.09.023]
PubMed id 26603189
Abstract
Secondary reference #6
Title Association of high fetuin-B concentrations in serum with fertilization rate in ivf: a cross-Sectional pilot study.
Authors J.Floehr, E.Dietzel, J.Neulen, B.Rösing, U.Weissenborn, W.Jahnen-Dechent.
Ref. Hum Reprod, 2016, 31, 630-637. [DOI no: 10.1093/humrep/dev340]
PubMed id 26759143
Abstract
Secondary reference #7
Title Recombinant fetuin-B protein maintains high fertilization rate in cumulus cell-Free mouse oocytes.
Authors E.Dietzel, J.Floehr, E.Van de leur, R.Weiskirchen, W.Jahnen-Dechent.
Ref. Mol Hum Reprod, 2017, 23, 25-33. [DOI no: 10.1093/molehr/gaw067]
PubMed id 27733489
Abstract
Secondary reference #8
Title The novel adipokine/hepatokine fetuin b in severe human and murine diabetic kidney disease.
Authors S.Kralisch, A.Hoffmann, N.Klöting, A.Bachmann, J.Kratzsch, M.Blüher, M.Z.Zhang, R.C.Harris, M.Stumvoll, M.Fasshauer, T.Ebert.
Ref. Diabetes Metab, 2017, 43, 465-468. [DOI no: 10.1016/j.diabet.2017.01.005]
PubMed id 28214129
Abstract
Secondary reference #9
Title Maternal malnourishment induced upregulation of fetuin-B blunts nephrogenesis in the low birth weight neonate.
Authors M.M.Rabadi, W.Abdulmahdi, L.Nesi, E.Jules, Y.Marghani, E.Sheinin, J.Tilzer, S.Gupta, S.Chen, N.D.Cassimatis, M.Lipphardt, P.B.Kozlowski, B.B.Ratliff.
Ref. Dev Biol, 2018, 443, 78-91. [DOI no: 10.1016/j.ydbio.2018.09.001]
PubMed id 30189195
Abstract
Secondary reference #10
Title Mammalian plasma fetuin-B is a selective inhibitor of ovastacin and meprin metalloproteinases.
Authors K.Karmilin, C.Schmitz, M.Kuske, H.Körschgen, M.Olf, K.Meyer, A.Hildebrand, M.Felten, S.Fridrich, I.Yiallouros, C.Becker-Pauly, R.Weiskirchen, W.Jahnen-Dechent, J.Floehr, W.Stöcker.
Ref. Sci Rep, 2019, 9, 546. [DOI no: 10.1038/s41598-018-37024-5]
PubMed id 30679641
Abstract
PROCHECK
Go to PROCHECK summary
 Headers

 

spacer

spacer