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PDBsum entry 6g7f

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Hydrolase PDB id
6g7f
Contents
Protein chains
250 a.a.
244 a.a.
240 a.a.
235 a.a.
231 a.a.
243 a.a.
241 a.a.
226 a.a.
204 a.a.
195 a.a.
212 a.a.
222 a.a.
229 a.a.
196 a.a.
Ligands
EPW ×6
Metals
_CL ×2
_MG ×8
Waters ×454

References listed in PDB file
Key reference
Title Design, Synthesis, And evaluation of cystargolide-Based β-Lactones as potent proteasome inhibitors.
Authors D.Niroula, L.P.Hallada, C.Le chapelain, S.K.Ganegamage, D.Dotson, S.Rogelj, M.Groll, R.Tello-Aburto.
Ref. Eur J Med Chem, 2018, 157, 962-977. [DOI no: 10.1016/j.ejmech.2018.08.052]
PubMed id 30165344
Abstract
The peptidic β-lactone proteasome inhibitors (PIs) cystargolides A and B were used to conduct structure-activity relationship (SAR) studies in order to assess their anticancer potential. A total of 24 different analogs were designed, synthesized and evaluated for proteasome inhibition, for cytotoxicity towards several cancer cell lines, and for their ability to enter intact cells. X-ray crystallographic analysis and subunit selectivity was used to determine the specific subunit binding associated with the structural modification of the β-lactone (P1), peptidic core, (Px and Py), and end-cap (Pz) of our scaffold. The cystargolide derivative 5k, structurally unique at both Py and P1, exhibited the most promising inhibitory activity for the β5 subunit of human proteasomes (IC50 = 3.1 nM) and significant cytotoxicity towards MCF-7 (IC50 = 416 nM), MDA-MB-231 (IC50 = 74 nM) and RPMI 8226 (IC50 = 41 nM) cancer cell lines. Cellular infiltration assays revealed that minor structural modifications have significant effects on the ability of our PIs to inhibit intracellular proteasomes, and we identified 5k as a promising candidate for continued therapeutic studies. Our novel drug lead 5k is a more potent proteasome inhibitor than carfilzomib with mid-to-low nanomolar IC50 measurements and it is cytotoxic against multiple cancer cell lines at levels approaching those of carfilzomib.
PROCHECK
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