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PDBsum entry 6fb8

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6fb8 calculated with MOLE 2.0 PDB id
6fb8
Pores calculated on whole structure Pores calculated excluding ligands

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2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.45 1.46 40.8 -0.73 -0.44 7.5 84 3 0 5 4 2 0 0  DC 502 C DA 503 C DA 504 C DA 505 C DA 506 C DC
507 C DT 508 C DG 509 C DC 510 C DC 614 D DG 615
D DC 616 D
2 1.73 1.73 41.2 -0.50 -0.27 9.7 86 4 0 6 5 2 0 0  DC 514 C DG 515 C DT 601 D DC 602 D DA 603 D DA
604 D DA 605 D DA 606 D DC 607 D DG 608 D DT 609
D DC 610 D

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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