 |
PDBsum entry 6f9f
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 6f9f calculated with MOLE 2.0
|
PDB id
|
|
|
|
6f9f
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
Pores calculated on whole structure |
 |
Pores calculated excluding ligands
|
|
|
 |
 |
 |
 |
 |
|
 |
|
|
|
 |
 |
|
 |
|
|
|
 |
23 pores,
coloured by radius |
 |
23 pores,
coloured by radius
|
23 pores,
coloured as in list below
|
|
|
 |
 |
 |
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
 |
|
|
|
 |
Free R
|
 |
|
|
|
|
 |
Length
|
 |
|
|
|
|
 |
HPathy
|
 |
|
|
|
|
 |
HPhob
|
 |
|
|
|
|
 |
Polar
|
 |
|
|
|
|
 |
Rel Mut
|
 |
|
|
|
|
 |
Residue..type
|
 |
|
|
|
|
 |
Ligands
|
 |
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.17 |
3.00 |
54.3 |
-1.40 |
-0.33 |
16.4 |
83 |
 |
4 |
3 |
8 |
4 |
2 |
1 |
0 |
 |
|
 |
 |
2 |
 |
1.63 |
1.81 |
68.3 |
-1.05 |
-0.54 |
16.4 |
90 |
5 |
4 |
10 |
6 |
2 |
1 |
1 |
|
 |
3 |
 |
2.67 |
4.09 |
81.7 |
-1.53 |
-0.42 |
19.6 |
80 |
8 |
5 |
7 |
5 |
2 |
1 |
0 |
|
 |
4 |
 |
1.28 |
1.29 |
98.3 |
-1.27 |
-0.48 |
18.6 |
85 |
7 |
6 |
8 |
10 |
2 |
4 |
2 |
|
 |
5 |
 |
1.55 |
1.58 |
103.4 |
-1.14 |
-0.51 |
18.3 |
81 |
6 |
7 |
7 |
11 |
2 |
1 |
0 |
|
 |
6 |
 |
1.53 |
1.71 |
117.1 |
-1.31 |
-0.31 |
18.0 |
81 |
7 |
6 |
7 |
10 |
3 |
3 |
0 |
|
 |
7 |
 |
1.72 |
1.85 |
125.7 |
-1.19 |
-0.36 |
17.5 |
84 |
7 |
8 |
10 |
8 |
2 |
5 |
0 |
|
 |
8 |
 |
1.60 |
1.60 |
126.9 |
-1.28 |
-0.22 |
13.8 |
83 |
8 |
4 |
9 |
4 |
4 |
3 |
0 |
|
 |
9 |
 |
1.80 |
1.80 |
136.4 |
-1.15 |
-0.22 |
18.2 |
84 |
7 |
5 |
9 |
6 |
2 |
3 |
0 |
|
 |
10 |
 |
1.52 |
1.71 |
148.0 |
-1.43 |
-0.38 |
18.0 |
80 |
9 |
10 |
17 |
11 |
5 |
4 |
0 |
|
 |
11 |
 |
1.58 |
1.78 |
170.0 |
-1.47 |
-0.31 |
19.1 |
84 |
7 |
8 |
12 |
12 |
3 |
5 |
0 |
|
 |
12 |
 |
1.71 |
1.85 |
168.9 |
-1.28 |
-0.39 |
16.4 |
83 |
7 |
8 |
10 |
9 |
2 |
6 |
0 |
|
 |
13 |
 |
1.23 |
1.23 |
206.9 |
-1.41 |
-0.47 |
19.5 |
86 |
14 |
10 |
13 |
14 |
3 |
6 |
2 |
|
 |
14 |
 |
1.62 |
1.73 |
214.8 |
-1.77 |
-0.47 |
23.0 |
83 |
13 |
10 |
9 |
5 |
2 |
5 |
0 |
|
 |
15 |
 |
1.31 |
1.35 |
244.1 |
-1.35 |
-0.40 |
17.3 |
84 |
11 |
12 |
16 |
18 |
5 |
8 |
2 |
|
 |
16 |
 |
1.30 |
1.56 |
236.9 |
-1.60 |
-0.46 |
17.3 |
81 |
7 |
6 |
8 |
8 |
2 |
5 |
0 |
|
 |
17 |
 |
1.74 |
1.72 |
249.5 |
-1.86 |
-0.41 |
21.0 |
79 |
12 |
12 |
9 |
7 |
4 |
7 |
0 |
|
 |
18 |
 |
1.52 |
1.71 |
266.4 |
-1.55 |
-0.41 |
18.8 |
83 |
11 |
14 |
17 |
16 |
4 |
7 |
0 |
|
 |
19 |
 |
1.33 |
1.62 |
252.8 |
-1.27 |
-0.48 |
17.2 |
84 |
7 |
8 |
9 |
8 |
1 |
4 |
0 |
|
 |
20 |
 |
1.35 |
1.36 |
281.8 |
-1.26 |
-0.49 |
17.1 |
85 |
17 |
13 |
22 |
16 |
3 |
6 |
2 |
|
 |
21 |
 |
1.61 |
1.58 |
295.1 |
-1.56 |
-0.39 |
17.4 |
85 |
15 |
11 |
18 |
11 |
4 |
7 |
0 |
|
 |
22 |
 |
1.07 |
1.31 |
333.5 |
-1.82 |
-0.51 |
21.4 |
80 |
12 |
12 |
8 |
6 |
3 |
5 |
0 |
|
 |
23 |
 |
1.53 |
1.67 |
373.6 |
-1.77 |
-0.46 |
21.6 |
83 |
18 |
17 |
17 |
15 |
4 |
7 |
0 |
|
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
 |
Residue-type_colouring |
 |
|
 |
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
 |