spacer
spacer

PDBsum entry 6ejl

Go to PDB code: 
Top Page protein ligands Protein-protein interface(s) tunnels links
Tunnel analysis for: 6ejl calculated with MOLE 2.0 PDB id
6ejl
Tunnels calculated on whole structure Tunnels calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
5 tunnels, coloured by tunnel radius 6 tunnels, coloured by tunnel radius 6 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.26 1.52 22.3 0.60 0.33 7.8 76 1 1 2 7 2 1 0  
2 1.31 1.59 26.5 -0.87 0.01 15.6 74 4 1 2 5 3 0 0  SEP 966 D
3 1.36 1.59 30.6 0.31 0.31 10.5 75 2 2 3 7 3 2 0  
4 1.32 1.47 17.5 -0.98 -0.37 8.9 83 1 1 4 2 1 0 0  
5 1.69 2.58 17.0 -0.73 -0.11 19.6 79 3 1 2 3 1 0 0  
6 1.46 1.82 15.5 -0.29 -0.21 10.9 77 0 1 2 3 2 0 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer