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PDBsum entry 6dnh

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Top Page protein dna_rna metals Protein-protein interface(s) pores links
Pore analysis for: 6dnh calculated with MOLE 2.0 PDB id
6dnh
Pores calculated on whole structure Pores calculated excluding ligands

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5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.22 1.47 97.6 -1.93 -0.42 21.7 80 13 7 7 6 3 3 0  C 7 E
2 1.26 1.33 128.4 -1.11 -0.19 16.6 76 14 7 7 12 6 7 0  
3 1.45 1.71 212.3 -1.44 -0.33 16.8 81 20 11 18 16 7 5 0  
4 1.59 1.61 219.5 -1.52 -0.45 18.5 80 15 13 11 14 5 6 1  C 7 E
5 1.42 2.21 243.1 -1.51 -0.36 17.5 77 24 14 15 16 10 10 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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