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PDBsum entry 6dfc

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Top Page protein dna_rna metals tunnels links
Tunnel analysis for: 6dfc calculated with MOLE 2.0 PDB id
6dfc
Tunnels calculated on whole structure Tunnels calculated excluding ligands

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2 tunnels, coloured by tunnel radius 2 tunnels, coloured by tunnel radius 2 tunnels, coloured as in
list below
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.
Tunnels
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.67 1.81 20.5 -1.62 -0.33 21.7 74 3 2 0 2 1 0 0  DU 7 D DT 8 D DT 24 E DT 25 E DG 26 E DC 28 E DA
29 E
2 1.68 1.81 22.3 -1.46 -0.40 20.3 78 1 1 0 2 1 0 0  DU 7 D DT 8 D DC 11 D DA 23 E DT 24 E DT 25 E DG
26 E DC 28 E DA 29 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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