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PDBsum entry 6cyb

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Pore analysis for: 6cyb calculated with MOLE 2.0 PDB id
6cyb
Pores calculated on whole structure Pores calculated excluding ligands

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6 pores, coloured by radius 6 pores, coloured by radius 6 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.31 1.76 39.1 -0.87 -0.12 14.6 84 4 1 5 6 3 1 0  EDO 1003 A EDO 1004 A EDO 1005 A EDO 1007 A FKV
1008 A
2 1.37 1.37 71.2 -0.88 -0.29 14.0 88 6 3 9 9 3 1 0  EDO 1004 A EDO 1003 B EDO 1004 B EDO 1005 B FKV
1006 B
3 0.97 0.95 73.1 -1.76 -0.14 28.4 82 9 5 4 7 3 0 0  
4 1.00 1.00 85.2 -1.02 -0.24 18.4 86 9 4 8 7 3 1 0  EDO 1003 B EDO 1004 B EDO 1005 B FKV 1006 B
5 1.36 1.37 90.1 -1.58 -0.26 23.8 83 13 5 6 9 4 1 0  EDO 1003 B EDO 1004 B EDO 1005 B FKV 1006 B
6 1.13 1.05 97.9 -1.14 -0.29 18.6 87 8 4 9 9 3 1 0  EDO 1003 A EDO 1004 A EDO 1005 A EDO 1007 A FKV
1008 A

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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