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PDBsum entry 6cvs

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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6cvs calculated with MOLE 2.0 PDB id
6cvs
Pores calculated on whole structure Pores calculated excluding ligands

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4 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.44 1.61 25.2 -1.56 -0.02 18.5 72 4 1 2 3 4 0 0  
2 1.80 1.87 27.5 -2.68 -0.58 26.6 73 3 2 1 0 0 2 0  DT 2 D DC 4 D DT 5 D DC 4 E DT 5 E DA 6 E DG 7 E
DA 8 E DA 9 E
3 1.71 1.90 33.6 -2.31 -0.46 23.3 74 6 4 2 2 3 2 0  DC 4 E
4 1.39 1.48 42.2 -1.28 -0.19 21.0 78 4 3 2 4 2 1 0  AMP 401 A DG 1 D
5 1.57 4.59 45.9 -1.81 -0.45 25.3 83 3 3 2 2 1 0 0  AMP 401 A DG 1 D DT 2 D DT 3 D DT 5 D DT 3 E DC 4
E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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