PDBsum entry 6cox

Pore analysis for: 6cox calculated with

MOLE 2.0

PDB id

6cox

Pores calculated on whole structure

Pores calculated excluding ligands

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without HETATM:

12 pores, coloured by radius

14 pores, coloured by radius

14 pores, coloured as in
list below

Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.

Pores

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

2.63

2.81

27.6

-0.47

0.07

8.0

79

2

0

4

2

2

0

0

2

1.85

1.94

27.6

-1.14

-0.44

12.2

76

3

1

4

1

0

2

2

3

2.20

2.36

35.3

-1.51

-0.28

13.4

71

3

2

5

2

2

2

2

4

1.47

1.47

39.6

-1.91

-0.62

6.4

71

3

0

5

2

2

2

0

5

1.42

1.42

46.4

-1.81

-0.39

16.8

74

4

4

4

2

3

3

0

6

1.44

1.44

47.3

-1.01

-0.35

12.3

77

3

3

2

2

2

1

2

7

1.44

1.44

50.4

-1.60

-0.32

15.4

75

5

3

3

2

3

2

0

8

1.74

1.96

56.0

-1.50

-0.36

14.0

71

6

3

3

2

3

2

2

9

1.25

2.66

56.9

-0.83

-0.23

17.2

74

5

3

5

6

3

0

0

NAG 671 B

10

1.47

1.47

61.3

-1.54

-0.44

8.5

71

5

2

7

2

3

3

2

11

1.26

2.59

80.5

-1.86

-0.48

24.3

80

8

8

5

4

3

0

0

NAG 671 B

12

1.11

1.38

81.2

-0.71

-0.26

12.6

81

7

4

8

7

2

2

0

NAG 671 A

13

1.07

1.40

99.4

-0.42

-0.11

13.2

80

8

4

8

10

2

2

0

NAG 671 B HEM 682 B

14

1.28

2.65

120.9

-1.21

-0.30

19.1

79

10

8

8

9

4

1

2

NAG 671 B HEM 682 B

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Pores were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.