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PDBsum entry 6c4h
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Top Page protein dna_rna ligands metals Protein-protein interface(s) pores links
Pore analysis for: 6c4h calculated with MOLE 2.0 PDB id
6c4h
Pores calculated on whole structure Pores calculated excluding ligands
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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.96 1.98 28.6 -0.95 -0.86 11.6 81 0 2 0 0 0 0 0  U 824 A A 825 A U 2259 A C 2260 A C 2263 A C 2264
A U 2265 A A 2266 A A 2268 A A 2270 A G 2271 A U
2272 A A 2273 A G 2428 A G 2429 A
2 3.36 3.36 29.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  A 1801 A A 1803 A A 1805 A A 1810 A G 1811 A U
1812 A G 1813 A A 1815 A C 1816 A U 2085 A U 2086
A G 2087 A A 2088 A C 2089 A U 2229 A G 2230 A
3 1.96 1.98 43.2 -0.82 -0.84 9.7 81 0 2 0 0 0 0 0  C 823 A U 824 A C 946 A G 966 A U 967 A C 968 A C
2263 A C 2264 A U 2265 A A 2266 A A 2268 A A 2270
A G 2271 A U 2272 A A 2273 A
4 1.62 1.62 44.2 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 823 A U 824 A A 825 A U 827 A U 828 A A 829 A A
945 A C 946 A C 965 A G 966 A U 967 A C 968 A G
2246 A C 2248 A C 2258 A U 2259 A A 2274 A A 2426
A C 2427 A G 2429 A A 2430 A U 2431 A A 2433 A MG
3003 A
5 1.31 1.31 53.7 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 823 A G 830 A A 945 A C 946 A A 947 A C 964 A C
965 A G 966 A U 967 A C 968 A G 2029 A A 2030 A A
2031 A A 2033 A C 2055 A U 2249 A A 2448 A U 2449
A A 2497 A OMC 2498 A C 2499 A MG 3003 A MG 3026 A
6 2.38 2.38 53.9 -0.63 -0.68 8.6 85 1 0 0 1 0 0 0  A 1803 A C 1804 A G 1839 A G 1840 A U 1841 A G
1842 A C 1843 A C 1844 A G 1846 A C 1895 A G 1896
A G 1897 A G 2083 A C 2084 A U 2085 A U 2086 A G
2087 A A 2088 A C 2089 A U 2229 A G 2230 A G 2235
A U 2236 A
7 2.27 2.27 54.1 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 2008 A G 2012 A A 2014 A A 2015 A U 2016 A U
2017 A G 2018 A A 2019 A A 2020 A U 2022 A A 2030
A A 2033 A G 2035 A C 2047 A G 2048 A A 2054 A C
2055 A U 2615 A
8 1.52 1.52 70.0 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 790 A C 791 A A 792 A A 793 A U 1782 A G 2018 A
G 2029 A A 2030 A A 2031 A A 2033 A C 2055 A G
2056 A A 2059 A G 2061 A A 2062 A C 2440 A U 2441
A C 2442 A U 2500 A C 2501 A G 2502 A 2MA 2503 A
PSU 2504 A G 2505 A U 2506 A U 2586 A U 2609 A
9 1.37 1.37 88.5 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 790 A C 791 A A 792 A A 793 A C 823 A G 830 A A
945 A C 946 A C 964 A C 965 A G 966 A U 967 A C
968 A U 1782 A A 2062 A C 2063 A C 2064 A C 2065
A C 2066 A G 2067 A G7M 2069 A A 2070 A G 2246 A
A 2247 A C 2248 A U 2249 A G 2252 A U 2438 A A
2439 A C 2440 A U 2441 A C 2442 A U 2449 A U 2586
A MG 3003 A
10 1.56 1.56 95.1 -0.64 -0.59 5.6 54 1 0 0 0 1 0 0  G 733 A A 734 A A 735 A C 736 A C 737 A G 738 A G
759 A G 760 A A 761 A U 762 A G 763 A C 765 A U
766 A U 767 A G 771 A C 772 A G 777 A G 778 A U
779 A G 780 A A 781 A U 1777 A U 1778 A A 1803 A
C 1804 A A 1805 A C 1806 A G 1807 A G 1813 A G
1824 A A 2082 A G 2083 A C 2084 A U 2085 A U 2086
A G 2087 A A 2088 A C 2089 A U 2229 A G 2230 A G
2239 A
11 1.91 1.91 97.8 -0.66 -0.70 6.0 89 2 0 3 3 0 0 0  U 790 A C 791 A A 792 A A 793 A U 1782 A C 1941 A
C 1942 A G 1945 A U 1946 A C 1947 A G 1948 A G
1949 A G 1950 A U 1951 A A 1953 A G 1954 A U 1955
A U 1963 A C 1965 A A 1966 A A 2062 A C 2063 A C
2064 A G 2253 A G 2437 A U 2438 A A 2439 A C 2440
A U 2441 A C 2442 A C 2558 A C 2559 A U 2585 A U
2586 A U 2593 A C 2594 A A 2600 A C 2601 A A 2602
A G 2603 A U 2609 A DG 70 x DA 72 x DA 73 x DC 74
x DC 75 x
12 1.24 1.24 102.2 -0.54 -0.80 3.4 104 0 0 1 0 0 0 0  G 2018 A G 2029 A A 2030 A A 2031 A A 2033 A C
2055 A G 2056 A A 2059 A U 2500 A C 2501 A G 2502
A 2MA 2503 A PSU 2504 A G 2505 A U 2506 A C 2507
A G 2508 A G 2509 A C 2512 A A 2513 A U 2514 A C
2515 A C 2517 A U 2519 A G 2523 A A 2541 A A 2542
A G 2543 A G 2544 A G 2545 A U 2546 A A 2547 A U
2555 A C 2556 A U 2568 A U 2571 A A 2572 A G 2574
A C 2575 A G 2576 A MG 3032 A
13 1.62 1.62 124.0 -0.58 -0.52 6.8 69 2 0 0 1 1 0 0  A 735 A C 736 A C 737 A G 738 A G 759 A G 760 A A
761 A U 762 A G 763 A C 765 A U 766 A U 767 A G
771 A C 772 A G 777 A G 778 A U 779 A G 780 A A
781 A U 1777 A U 1778 A A 1805 A C 1806 A G 1813
A G 1824 A C 1838 A G 1839 A G 1840 A U 1841 A G
1842 A C 1843 A C 1844 A G 1846 A C 1895 A G 1896
A G 1897 A A 2082 A G 2083 A C 2084 A G 2235 A U
2236 A G 2239 A
14 2.23 2.23 133.2 -0.59 -0.69 6.1 89 2 0 3 3 0 0 0  C 1838 A G 1839 A G 1840 A U 1841 A G 1842 A G
1846 A C 1895 A G 1896 A G 1897 A G 1903 A G 1904
A C 1905 A C 1941 A C 1942 A G 1945 A U 1946 A C
1947 A G 1948 A G 1949 A G 1950 A U 1951 A A 1953
A G 1954 A U 1955 A U 1963 A C 1965 A A 1966 A U
2076 A U 2236 A C 2558 A C 2559 A U 2593 A C 2594
A G 2595 A U 2596 A DG 70 x DC 71 x DA 72 x DA 73
x
15 2.40 2.40 132.1 -0.58 -0.66 5.2 54 1 0 0 0 1 0 0  G 738 A A 739 A U 741 A A 742 A U 744 A 1MG 745 A
PSU 746 A G 748 A A 749 A A 753 A U 754 A U 766 A
U 767 A G 771 A C 772 A G 777 A G 778 A U 779 A G
780 A A 781 A C 786 A U 1778 A A 1780 A U 1781 A
U 1782 A A 1803 A C 1804 A A 1805 A C 1806 A G
1807 A G 1813 A G 1824 A A 2003 A G 2004 A A 2082
A G 2083 A C 2084 A U 2085 A U 2086 A G 2087 A A
2088 A C 2089 A U 2229 A G 2230 A G 2239 A U 2609
A C 2610 A C 2611 A C 2612 A U 2613 A
16 1.61 1.61 134.6 -0.78 -0.66 9.0 91 4 0 3 3 0 0 0  U 827 A U 828 A A 829 A C 1942 A G 1945 A U 1946
A C 1947 A G 1948 A G 1949 A G 1950 A U 1951 A A
1953 A G 1954 A U 1955 A U 1963 A G 2246 A C 2248
A U 2257 A C 2258 A U 2259 A A 2274 A C 2275 A A
2426 A C 2427 A G 2429 A A 2430 A U 2431 A A 2433
A C 2558 A C 2559 A DC 0 x DG 1 x DC 2 x DG 3 x
DC 69 x DG 70 x DC 71 x
17 2.49 2.49 139.1 -0.61 -0.80 6.6 86 1 2 0 1 0 0 0  C 823 A C 946 A A 947 A C 948 A G 949 A G 950 A C
951 A G 952 A G 953 A G 954 A U 958 A A 960 A U
963 A C 964 A C 965 A G 966 A U 967 A C 968 A U
2460 A A 2461 A C 2463 A G 2464 A C 2465 A C 2480
A G 2481 A A 2482 A C 2483 A G 2484 A G 2485 A C
2486 A C 2520 A C 2521 A U 2522 A G 2523 A A 2534
A G 2535 A G 2536 A U 2537 A C 2538 A A 2564 A
18 1.79 1.80 140.7 -0.79 -0.70 9.1 90 4 1 3 3 0 0 0  U 824 A C 1942 A G 1945 A U 1946 A C 1947 A G
1948 A G 1949 A G 1950 A U 1951 A A 1953 A G 1954
A U 1955 A U 1963 A U 2257 A U 2259 A C 2263 A C
2264 A U 2265 A A 2266 A A 2268 A A 2270 A G 2271
A U 2272 A A 2273 A A 2274 A C 2275 A C 2558 A C
2559 A DC 0 x DG 1 x DC 2 x DG 3 x DC 69 x DG 70
x DC 71 x
19 2.39 2.39 143.9 -0.62 -0.81 6.5 83 1 2 0 0 0 0 0  C 823 A C 946 A A 947 A C 948 A G 949 A G 950 A C
951 A G 952 A G 953 A G 954 A U 958 A A 960 A U
963 A C 964 A C 965 A G 966 A U 967 A C 968 A G
1125 A A 1126 A A 1127 A U 2460 A A 2461 A C 2463
A G 2464 A C 2465 A C 2466 A A 2468 A U 2477 A G
2481 A A 2482 A C 2483 A G 2484 A G 2485 A C 2486
A A 2518 A C 2538 A C 2539 A C 2540 A A 2541 A
20 1.47 1.47 144.8 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  U 790 A C 791 A A 792 A A 793 A U 1782 A C 1838 A
G 1839 A G 1840 A U 1841 A G 1842 A G 1846 A C
1895 A G 1896 A G 1897 A G 1903 A G 1904 A C 1905
A A 2062 A C 2063 A C 2064 A U 2076 A U 2236 A G
2253 A C 2254 A G 2255 A G 2437 A U 2438 A A 2439
A C 2440 A U 2441 A C 2442 A U 2585 A U 2586 A C
2594 A G 2595 A U 2596 A A 2600 A C 2601 A U 2609
A DG 3 x DG 70 x DC 71 x DA 72 x DA 73 x DC 74 x
DC 75 x
21 1.94 2.01 145.9 -0.54 -0.81 4.2 92 0 1 1 1 0 0 0  U 958 A A 959 A A 960 A C 961 A A 1129 A U 1130 A
G 2018 A G 2027 A U 2028 A G 2029 A A 2030 A A
2031 A G 2032 A A 2033 A G 2053 A A 2054 A C 2055
A G 2455 A C 2456 A PSU 2457 A G 2458 A A 2459 A
U 2460 A A 2461 A C 2463 A G 2464 A C 2465 A C
2480 A G 2481 A A 2482 A C 2483 A G 2484 A G 2485
A C 2486 A G 2487 A G 2488 A U 2489 A G 2490 A C
2520 A C 2521 A U 2522 A G 2523 A A 2534 A G 2535
A G 2536 A U 2537 A C 2538 A A 2564 A
22 1.77 1.77 149.6 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 1838 A G 1839 A G 1840 A U 1841 A G 1842 A G
1846 A C 1895 A G 1896 A G 1897 A G 1903 A G 1904
A C 1905 A G 2029 A A 2030 A A 2031 A A 2033 A C
2055 A G 2056 A A 2059 A G 2061 A A 2062 A C 2063
A C 2064 A U 2076 A U 2236 A G 2253 A C 2254 A G
2255 A G 2437 A U 2438 A A 2439 A U 2500 A C 2501
A G 2502 A 2MA 2503 A PSU 2504 A G 2505 A U 2506
A U 2585 A U 2586 A C 2594 A G 2595 A U 2596 A A
2600 A C 2601 A DG 3 x DG 70 x DC 71 x DA 72 x DA
73 x DC 74 x DC 75 x
23 1.55 1.55 146.8 -0.56 -0.66 4.9 54 1 0 0 0 1 0 0  G 738 A A 739 A U 741 A A 742 A U 744 A 1MG 745 A
PSU 746 A 5MU 747 A G 748 A A 752 A A 753 A U 754
A U 766 A U 767 A G 771 A C 772 A G 777 A G 778 A
U 779 A G 780 A A 781 A C 786 A U 790 A C 791 A A
792 A A 793 A U 1778 A A 1780 A U 1781 A U 1782 A
A 1803 A C 1804 A A 1805 A C 1806 A G 1807 A G
1813 A G 1824 A A 2058 A A 2059 A A 2062 A A 2082
A G 2083 A C 2084 A U 2085 A U 2086 A G 2087 A A
2088 A C 2089 A U 2229 A G 2230 A G 2239 A C 2440
A U 2441 A C 2442 A U 2609 A C 2610 A C 2611 A
24 1.95 2.01 150.6 -0.55 -0.81 4.2 89 0 1 1 0 0 0 0  U 958 A A 959 A A 960 A C 961 A G 1125 A A 1126 A
A 1127 A A 1129 A U 1130 A G 2018 A G 2027 A U
2028 A G 2029 A A 2030 A A 2031 A G 2032 A A 2033
A G 2053 A A 2054 A C 2055 A G 2455 A C 2456 A PS
U 2457 A G 2458 A A 2459 A U 2460 A A 2461 A C
2463 A G 2464 A C 2465 A C 2466 A A 2468 A U 2477
A G 2481 A A 2482 A C 2483 A G 2484 A G 2485 A C
2486 A G 2487 A G 2488 A U 2489 A G 2490 A A 2518
A C 2538 A C 2539 A C 2540 A A 2541 A
25 1.55 1.55 157.3 -0.40 -0.80 3.4 0 0 0 0 0 0 0 0  C 823 A G 830 A A 945 A C 946 A C 964 A C 965 A G
966 A U 967 A C 968 A G 1839 A G 1840 A U 1841 A
G 1842 A G 1846 A C 1895 A G 1896 A G 1897 A G
1903 A G 1904 A C 1905 A C 2065 A C 2066 A G 2067
A U 2076 A U 2236 A G 2246 A A 2247 A C 2248 A U
2249 A G 2252 A G 2253 A C 2254 A G 2255 A G 2437
A U 2438 A U 2449 A C 2594 A G 2595 A U 2596 A A
2600 A MG 3003 A MG 3018 A DG 3 x DG 70 x DC 71 x
DA 72 x DA 73 x DC 74 x
26 3.29 3.29 168.5 -0.54 -0.66 7.9 89 2 2 0 4 0 1 0  C 823 A C 946 A A 947 A C 948 A G 949 A G 950 A C
951 A G 952 A G 953 A G 954 A U 958 A A 960 A U
963 A C 964 A C 965 A G 966 A U 967 A C 968 A U
1946 A C 1947 A G 1948 A G 1949 A G 1950 A U 1951
A A 1953 A G 1954 A U 1955 A U 2460 A A 2461 A C
2462 A C 2463 A G 2481 A A 2482 A C 2483 A G 2484
A G 2485 A C 2486 A C 2520 A G 2536 A U 2537 A C
2558 A C 2559 A A 2566 A
27 1.96 2.01 175.3 -0.49 -0.72 5.3 92 1 1 1 4 0 1 0  U 958 A A 959 A A 960 A C 961 A A 1129 A U 1130 A
U 1946 A C 1947 A G 1948 A G 1949 A G 1950 A U
1951 A A 1953 A G 1954 A U 1955 A G 2018 A G 2027
A U 2028 A G 2029 A A 2030 A A 2031 A G 2032 A A
2033 A G 2053 A A 2054 A C 2055 A G 2455 A C 2456
A PSU 2457 A G 2458 A A 2459 A U 2460 A A 2461 A
C 2462 A C 2463 A G 2481 A A 2482 A C 2483 A G
2484 A G 2485 A C 2486 A G 2487 A G 2488 A U 2489
A G 2490 A C 2520 A G 2536 A U 2537 A C 2558 A C
2559 A A 2566 A
28 1.27 1.27 182.5 -0.70 -0.76 7.6 82 2 2 0 1 0 1 0  C 823 A C 946 A A 947 A C 948 A G 949 A G 950 A C
951 A G 952 A G 953 A G 954 A U 958 A A 960 A U
963 A C 964 A C 965 A G 966 A U 967 A C 968 A U
2460 A A 2461 A C 2462 A C 2463 A G 2481 A A 2482
A C 2483 A G 2484 A G 2485 A C 2486 A G 2509 A C
2510 A C 2512 A A 2513 A U 2514 A C 2515 A C 2517
A U 2519 A C 2520 A G 2523 A U 2537 A A 2541 A A
2542 A G 2543 A G 2544 A G 2545 A U 2546 A A 2547
A U 2548 A C 2556 A G 2557 A C 2558 A A 2566 A G
2567 A U 2568 A
29 1.59 1.59 194.1 -0.45 -0.77 4.5 92 1 0 0 1 0 0 0  C 823 A U 824 A A 825 A A 829 A G 830 A A 945 A C
946 A C 964 A C 965 A A 1803 A C 1804 A G 1839 A
G 1840 A U 1841 A G 1842 A C 1843 A C 1844 A G
1846 A G 1903 A G 1904 A C 1905 A C 2065 A C 2066
A G 2067 A U 2076 A G 2083 A C 2084 A U 2085 A U
2086 A G 2087 A A 2088 A C 2089 A U 2229 A G 2230
A G 2235 A U 2236 A G 2246 A A 2247 A C 2248 A U
2249 A G 2252 A G 2253 A C 2254 A G 2255 A U 2259
A C 2260 A A 2274 A C 2427 A G 2428 A G 2429 A G
2437 A U 2438 A U 2449 A C 2594 A G 2595 A U 2596
A A 2600 A MG 3003 A MG 3018 A DG 3 x DG 70 x DC
71 x DA 72 x DA 73 x DC 74 x
30 2.16 2.16 203.8 -0.58 -0.65 7.3 90 4 0 3 5 0 0 0  A 1126 A A 1127 A A 1803 A C 1804 A G 1839 A G
1840 A U 1841 A G 1842 A C 1843 A C 1844 A G 1846
A G 1903 A G 1904 A C 1905 A C 1941 A C 1942 A G
1945 A U 1946 A C 1947 A U 1963 A C 1965 A A 1966
A U 2076 A G 2083 A C 2084 A U 2085 A U 2086 A G
2087 A A 2088 A C 2089 A U 2229 A G 2230 A G 2235
A U 2236 A C 2463 A G 2464 A A 2518 A U 2519 A C
2520 A G 2536 A U 2537 A C 2538 A C 2539 A C 2540
A A 2541 A C 2558 A C 2559 A A 2566 A U 2593 A C
2594 A G 2595 A U 2596 A DG 70 x DC 71 x DA 72 x
DA 73 x

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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