PDBsum entry 6bdf Go to PDB code:  Pore analysis for: 6bdf calculated with MOLE 2.0 PDB id 6bdf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.67 2.18 57.4 -0.25 -0.33 5.7 91 2 3 7 8 0 0 0   2 1.72 2.18 75.0 -0.15 -0.32 6.3 93 3 3 8 11 0 0 0   3 1.67 2.16 80.1 -0.31 -0.32 3.7 93 1 2 11 11 0 0 0   4 1.71 2.12 81.1 -0.25 -0.34 8.0 91 4 5 8 10 0 0 0   5 1.73 2.12 90.9 -0.39 -0.40 5.2 96 3 3 12 12 0 0 0   6 1.73 2.12 90.9 -0.39 -0.40 5.2 96 3 3 12 12 0 0 0   7 1.68 2.14 92.3 -0.59 -0.41 4.9 93 2 4 13 12 0 0 0   8 1.45 2.64 91.8 -1.99 -0.35 24.4 82 12 4 4 5 3 0 0   9 1.70 2.14 99.4 -0.45 -0.34 4.1 93 1 3 14 13 0 0 0   10 1.16 1.22 100.7 -2.08 -0.52 27.9 83 11 7 4 5 1 0 0   11 1.70 2.18 103.8 -0.24 -0.32 5.7 93 3 4 12 14 0 0 0   12 1.68 2.16 109.5 -0.64 -0.40 11.1 92 5 5 11 12 0 0 0   13 1.35 2.70 116.5 -2.00 -0.52 23.1 83 11 7 7 5 2 0 0   14 1.74 2.22 119.7 -0.42 -0.38 4.8 95 3 4 16 15 0 0 0   15 1.69 2.18 121.2 -0.65 -0.41 5.0 93 2 5 17 15 0 0 0   16 1.81 2.12 125.8 -0.48 -0.40 5.6 94 4 6 16 15 0 0 0   17 1.68 2.20 131.1 -0.82 -0.47 10.1 92 6 7 14 14 0 0 0   18 1.74 2.27 131.8 -0.82 -0.47 10.3 92 6 7 14 14 0 0 0   19 1.81 2.25 138.3 -0.71 -0.41 10.2 93 5 6 15 15 0 0 0   20 1.38 1.39 138.1 -2.44 -0.59 24.6 83 15 9 10 5 2 0 0   21 1.73 2.12 145.0 -0.76 -0.42 10.1 91 6 8 15 14 0 0 0   22 1.47 2.15 143.2 -1.17 -0.42 12.6 88 10 5 13 13 2 0 0   23 1.67 2.18 154.6 -0.76 -0.44 8.8 94 5 6 18 17 0 0 0   24 1.51 1.66 156.8 -1.11 -0.39 15.2 88 11 8 13 14 2 0 0   25 1.67 2.24 160.0 -0.82 -0.46 9.1 92 6 8 18 16 0 0 0   26 1.70 2.22 173.9 -0.70 -0.41 9.6 92 6 9 19 17 0 0 0   27 1.70 2.27 173.9 -0.76 -0.42 9.8 92 6 9 19 18 0 0 0   28 1.44 2.76 185.0 -0.86 -0.36 11.9 88 12 8 16 18 2 0 0   29 1.70 1.82 224.8 -1.09 -0.42 14.2 88 14 10 19 18 2 0 0   30 1.70 2.42 229.6 -0.84 -0.37 9.9 90 12 9 23 23 2 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.