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PDBsum entry 6b8h

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Pore analysis for: 6b8h calculated with MOLE 2.0 PDB id
6b8h
Pores calculated on whole structure Pores calculated excluding ligands

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30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.85 1.85 85.6 -1.02 -0.57 15.5 86 8 5 6 7 0 0 0  
2 1.21 1.30 106.7 -1.37 -0.43 16.8 75 6 9 3 8 4 6 0  
3 1.36 1.49 138.9 -1.09 -0.37 15.6 82 11 11 8 14 6 3 0  
4 1.60 2.61 150.9 0.99 0.52 11.0 88 13 6 19 42 1 2 0  
5 1.21 1.29 153.6 -1.38 -0.48 17.3 83 11 13 10 13 4 3 0  
6 2.12 2.28 153.8 -1.04 -0.30 19.6 81 14 7 8 12 4 1 0  
7 1.16 1.24 155.0 -1.51 -0.46 18.9 81 15 9 7 13 2 5 0  
8 2.00 2.24 164.1 0.39 0.14 9.7 77 7 4 8 25 12 3 0  
9 1.17 1.22 165.7 -1.69 -0.55 20.8 80 13 13 9 10 4 3 0  
10 2.23 2.98 177.3 1.76 0.81 7.2 84 9 3 10 43 6 4 0  
11 1.58 2.42 180.3 -2.17 -0.59 24.7 87 12 17 21 8 2 0 0  
12 1.65 2.29 187.8 -1.06 -0.38 14.9 85 19 9 12 20 4 5 0  
13 1.64 1.64 198.9 -1.30 -0.33 17.5 82 16 12 13 16 9 3 0  
14 1.69 1.83 202.5 -1.29 -0.47 16.1 86 19 11 14 18 2 5 0  
15 1.36 2.32 211.7 -1.94 -0.43 23.7 80 18 17 12 12 7 3 0  
16 1.63 2.36 220.1 -1.31 -0.48 18.7 85 15 19 15 20 4 3 0  UNK 1011 h UNK 1014 h UNK 1015 h
17 1.38 1.54 222.4 -1.33 -0.41 19.3 84 11 22 13 19 5 3 0  
18 1.57 1.60 226.0 -1.22 -0.49 16.8 84 17 15 17 18 6 3 0  UNK 1011 h UNK 1014 h
19 1.73 2.70 236.6 0.51 0.39 14.0 88 19 11 22 39 4 2 0  
20 1.65 2.38 242.1 -1.64 -0.55 20.3 86 19 17 19 15 4 3 0  
21 1.50 1.90 247.8 -0.10 -0.04 10.0 79 10 7 19 28 7 10 0  
22 1.40 2.45 261.0 -1.56 -0.38 21.0 81 16 18 15 18 7 3 0  
23 1.81 2.08 264.8 -1.36 -0.47 19.1 84 23 17 16 21 6 4 0  
24 1.62 2.44 259.8 -1.49 -0.47 20.5 84 17 15 15 15 2 4 0  
25 1.36 2.47 271.4 -1.26 -0.42 18.1 85 19 20 17 24 3 5 0  
26 1.64 2.18 298.5 -1.40 -0.48 19.4 84 18 25 21 21 5 5 0  
27 1.37 2.03 323.9 -0.74 -0.25 13.2 81 14 12 25 27 11 10 0  
28 1.90 2.54 314.1 -0.41 -0.10 11.2 76 15 8 19 29 16 11 0  
29 1.77 2.79 333.5 -0.55 -0.13 13.9 80 16 12 22 25 10 10 0  
30 1.35 1.54 343.4 -0.54 -0.16 13.9 82 17 14 24 27 11 9 0  

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
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