PDBsum entry 6aod

Tunnel analysis for: 6aod calculated with

MOLE 2.0

PDB id

6aod

Tunnels calculated on whole structure

Tunnels calculated excluding ligands

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MOLEonline 2.0 manipulation
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visualization
with HETATM:

without HETATM:

7 tunnels, coloured by tunnel radius

9 tunnels, coloured by tunnel radius

9 tunnels, coloured as in
list below

Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown.

Tunnels

Free R

Length

HPathy

HPhob

Polar

Rel Mut

Residue..type

Ligands

Radius

1

1.61

2.58

16.9

-0.32

-0.57

2.2

99

0

0

6

1

1

0

0

2

1.66

2.54

20.4

-0.67

-0.64

2.9

96

1

0

6

1

1

0

0

3

1.13

1.13

18.3

0.15

-0.31

6.5

73

0

2

2

3

2

1

0

GOL 304 A

4

1.15

1.15

18.7

0.05

-0.43

6.6

80

0

2

2

3

1

1

0

GOL 304 A

5

1.13

1.13

24.6

-0.25

-0.38

10.4

68

1

2

1

3

2

1

0

GOL 304 A

6

1.14

1.14

25.0

-0.46

-0.50

11.7

75

1

2

1

3

1

1

0

GOL 304 A

7

1.12

1.13

25.6

-0.60

-0.38

13.4

70

2

1

1

4

2

1

0

8

1.13

1.14

26.0

-0.54

-0.43

12.4

76

2

1

1

4

1

1

0

9

1.34

1.58

15.5

-0.72

-0.16

9.1

85

2

0

3

1

2

0

0

Residue-type_colouring

Positive	Negative	Neutral	Aliphatic	Aromatic	Pro & Gly	Cysteine
H,K,R	D,E	S,T,N,Q	A,V,L,I,M	F,Y,W	P,G	C

Acknowledgement

Tunnels were calculated by

MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.