 |
PDBsum entry 5ytc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pore analysis for: 5ytc calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5ytc
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Pores calculated on whole structure |
|
Pores calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
3 pores,
coloured by radius |
|
4 pores,
coloured by radius
|
4 pores,
coloured as in
list below
|
|
|
|
|
|
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
4.02 |
4.10 |
25.1 |
-1.34 |
-0.69 |
17.5 |
76 |
|
2 |
3 |
0 |
1 |
0 |
0 |
0 |
|
DG 101 B DA 102 B DC 103 B DC 104 B DA 105 B DG
208 C DC 209 C DC 210 C DG 211 C
|
 |
|
2 |
 |
1.19 |
1.38 |
39.6 |
0.38 |
0.44 |
15.1 |
68 |
5 |
4 |
0 |
5 |
5 |
0 |
0 |
DTP 902 A DA 105 B DC 109 B DG 110 B DC 111 B DOC
113 B DG 205 C DG 206 C DC 207 C DG 208 C
|
|
3 |
 |
1.49 |
1.46 |
48.8 |
-1.99 |
-0.73 |
21.3 |
88 |
4 |
3 |
2 |
0 |
0 |
1 |
0 |
DG 101 B DA 102 B DA 105 B DC 106 B DG 107 B DG
108 B DC 210 C DG 211 C DT 212 C DG 213 C DG 214 C
|
 |
4 |
 |
1.18 |
1.30 |
58.9 |
-0.66 |
-0.13 |
18.5 |
73 |
6 |
8 |
2 |
5 |
5 |
1 |
0 |
DTP 902 A DA 203 C
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program