PDBsum entry 5w3d Go to PDB code:  Pore analysis for: 5w3d calculated with MOLE 2.0 PDB id 5w3d Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 pores, coloured by radius 5 pores, coloured by radius 5 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.43 1.43 34.2 -2.53 -0.68 27.3 91 3 4 3 1 0 0 0   2 1.12 1.77 47.5 0.50 0.20 9.1 77 3 1 1 8 2 0 0   3 1.07 1.62 59.2 0.88 0.35 7.1 82 1 2 3 8 2 0 0   4 1.57 1.78 72.8 -0.97 -0.11 19.5 83 4 3 3 4 2 0 0   5 1.62 1.75 79.9 -1.50 -0.35 19.0 77 5 6 5 3 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.