PDBsum entry 5vy4 Go to PDB code:  Pore analysis for: 5vy4 calculated with MOLE 2.0 PDB id 5vy4 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.26 2.69 26.4 -3.17 -0.65 30.2 82 5 3 3 3 1 0 0   2 1.12 1.12 29.5 0.50 -0.03 5.7 83 0 2 1 7 1 1 0   3 1.47 2.04 41.7 -1.16 -0.49 12.9 86 2 4 5 6 1 2 0   4 1.47 2.04 58.8 -0.40 -0.17 14.2 90 5 3 4 8 0 0 0   5 1.46 2.04 59.1 -0.36 -0.14 14.6 90 5 3 3 8 0 0 0   6 1.25 2.78 59.9 -1.67 -0.19 17.8 79 5 3 8 6 5 0 0   7 1.30 2.63 66.6 -1.59 -0.39 16.5 86 7 3 6 5 2 0 0   8 1.50 2.04 76.1 -0.49 -0.25 11.4 89 2 6 8 13 1 0 0   9 1.26 3.13 76.4 -1.78 -0.19 15.1 79 5 3 10 7 6 0 0   10 1.53 2.04 85.6 -0.15 -0.11 12.2 87 2 7 7 15 1 0 0   11 1.45 2.03 91.2 -0.82 -0.33 11.8 87 2 8 10 15 1 2 0   12 1.62 2.04 106.8 -0.94 -0.36 12.7 89 5 7 10 16 0 2 0   13 1.26 2.64 107.9 -2.00 -0.41 22.9 84 12 7 9 7 2 0 0   14 1.26 2.66 108.1 -2.06 -0.42 23.7 84 12 7 9 7 2 0 0   15 1.47 1.97 110.6 -0.35 -0.23 13.2 86 4 9 8 14 2 0 0   16 1.46 2.02 113.7 -0.56 -0.20 13.9 88 2 9 11 16 1 0 0   17 1.30 2.73 120.4 -1.66 -0.37 19.2 86 12 7 10 10 2 0 0   18 1.54 2.03 123.4 -0.36 -0.23 11.3 88 4 10 11 19 2 0 0   19 1.48 1.98 129.1 -0.52 -0.18 14.6 89 5 9 11 17 0 0 0   20 1.60 1.99 132.2 -0.82 -0.28 13.0 89 5 9 13 20 0 2 0   21 1.28 3.23 134.4 -1.63 -0.37 19.2 86 12 7 11 10 2 0 0   22 1.28 3.08 134.8 -1.60 -0.33 19.4 85 12 7 12 12 4 0 0   23 1.60 1.98 142.8 -0.56 -0.21 12.5 90 5 9 14 22 0 0 0   24 1.38 2.69 143.8 -1.61 -0.29 23.7 84 15 9 10 10 2 0 0   25 1.44 1.44 166.5 -1.27 -0.20 19.6 86 15 9 10 14 2 0 0   26 1.39 3.04 169.3 -1.50 -0.27 21.6 84 15 10 13 13 4 0 0   27 1.49 1.95 177.1 -0.45 -0.19 13.6 88 7 12 14 24 1 0 0   28 1.49 1.95 176.9 -0.44 -0.19 13.5 88 7 12 14 24 1 0 0   29 1.45 2.91 185.8 -1.35 -0.19 15.2 83 12 7 19 16 10 0 0   30 1.52 2.02 205.0 -0.49 -0.19 13.1 90 10 11 17 29 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.