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PDBsum entry 5vpk
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Pore analysis for: 5vpk calculated with  MOLE 2.0
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PDB id
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5vpk
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Pores calculated on whole structure |
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Pores calculated excluding ligands
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9 pores,
coloured by radius |
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9 pores,
coloured by radius
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9 pores,
coloured as in
list below
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Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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2.63 |
2.70 |
32.1 |
-1.24 |
-0.32 |
4.3 |
70 |
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2 |
0 |
3 |
0 |
3 |
2 |
0 |
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2 |
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3.06 |
3.06 |
37.5 |
-0.62 |
-0.54 |
8.6 |
98 |
2 |
1 |
4 |
2 |
0 |
0 |
0 |
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3 |
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1.63 |
2.85 |
47.7 |
-1.55 |
-0.36 |
10.8 |
76 |
4 |
1 |
4 |
2 |
3 |
2 |
1 |
SO4 305 A
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4 |
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1.64 |
2.87 |
50.0 |
-1.55 |
-0.26 |
11.6 |
77 |
6 |
1 |
4 |
2 |
3 |
2 |
1 |
SO4 305 A
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5 |
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1.55 |
2.60 |
56.4 |
-1.41 |
-0.32 |
10.8 |
80 |
4 |
1 |
4 |
1 |
4 |
2 |
0 |
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6 |
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1.54 |
2.75 |
58.1 |
-1.40 |
-0.33 |
12.6 |
83 |
6 |
1 |
4 |
1 |
2 |
2 |
0 |
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7 |
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2.90 |
3.23 |
86.4 |
-2.00 |
-0.59 |
16.0 |
87 |
6 |
3 |
10 |
3 |
1 |
0 |
0 |
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8 |
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1.54 |
2.76 |
91.2 |
-1.91 |
-0.47 |
16.2 |
84 |
8 |
3 |
7 |
1 |
2 |
2 |
0 |
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9 |
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1.54 |
2.60 |
95.1 |
-1.94 |
-0.49 |
13.9 |
83 |
7 |
3 |
7 |
2 |
4 |
2 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program