PDBsum entry 5v3p Go to PDB code:  Pore analysis for: 5v3p calculated with MOLE 2.0 PDB id 5v3p Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.39 1.52 25.1 -0.79 -0.07 15.3 82 2 3 1 3 1 1 0   2 1.40 1.38 39.7 -1.23 -0.26 19.0 80 3 4 3 2 2 2 0   3 1.25 1.47 72.0 -0.76 -0.12 19.3 76 5 3 3 7 1 1 0   4 1.89 2.12 127.1 -1.76 -0.33 21.4 79 13 8 5 2 4 1 0  YCM 103 E 5 1.42 1.52 28.3 -0.18 -0.18 4.9 74 3 0 2 6 1 1 0   6 1.45 1.45 31.5 -0.15 -0.16 7.7 78 4 1 2 6 0 1 0   7 1.45 1.73 41.9 -2.65 -0.67 28.1 79 6 1 2 0 0 0 0   8 2.02 2.02 42.4 -2.07 -0.33 26.7 77 4 3 2 2 2 0 0  YCM 103 A 9 1.45 1.72 59.4 -1.61 -0.46 17.9 81 6 3 4 2 2 0 0  YCM 103 A 10 1.40 1.53 32.0 -0.36 -0.24 9.9 72 3 2 1 6 1 1 0   11 1.46 1.46 27.9 -0.14 -0.12 7.9 77 2 1 2 6 0 1 1   12 1.46 1.46 29.5 -0.27 -0.13 10.2 77 4 1 2 6 0 1 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.