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PDBsum entry 5uej

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protein ligands metals Protein-protein interface(s) links
Hydrolase PDB id
5uej
Jmol PyMol
Contents
Protein chains
375 a.a.
Ligands
SO4 ×5
Metals
_ZN ×5
Waters ×1128
PDB id:
5uej
Name: Hydrolase
Title: 1.30 a crystal structure of dape enzyme from neisseria menin mc58
Structure: Succinyl-diaminopimelate desuccinylase. Chain: a, b. Synonym: sdap desuccinylase,n-succinyl-ll-2,6-diaminoheptan amidohydrolase. Engineered: yes
Source: Neisseria meningitidis. Organism_taxid: 487. Strain: mc58. Gene: dape, nmb1530. Expressed in: escherichia coli. Expression_system_taxid: 562
Resolution:
1.30Å     R-factor:   0.115     R-free:   0.153
Authors: B.Nocek,A.Joachimiak,Center For Structural Genomics Of Infec Diseases (Csgid)
Key ref: B.Nocek et al. 1.30 a crystal structure of dape enzyme from neisseri meningitidis mc58. To be published, .
Date:
02-Jan-17     Release date:   01-Feb-17    
PROCHECK
Go to PROCHECK summary
 Headers
 References

Protein chains
Pfam   ArchSchema ?
Q9JYL2  (DAPE_NEIMB) -  Succinyl-diaminopimelate desuccinylase
Seq:
Struc:
381 a.a.
375 a.a.
Key:    PfamA domain  Secondary structure

 Enzyme reactions 
   Enzyme class: E.C.3.5.1.18  - Succinyl-diaminopimelate desuccinylase.
[IntEnz]   [ExPASy]   [KEGG]   [BRENDA]

      Pathway:
Lysine biosynthesis (later stages)
      Reaction: N-succinyl-LL-2,6-diaminoheptanedioate + H2O = succinate + LL-2,6- diaminoheptanedioate
N-succinyl-LL-2,6-diaminoheptanedioate
+ H(2)O
= succinate
+ LL-2,6- diaminoheptanedioate
Molecule diagrams generated from .mol files obtained from the KEGG ftp site
 Gene Ontology (GO) functional annotation 
  GO annot!
  Biological process     metabolic process   5 terms 
  Biochemical function     hydrolase activity     3 terms  

 

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