PDBsum entry 5udc Go to PDB code:  Pore analysis for: 5udc calculated with MOLE 2.0 PDB id 5udc Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   24 pores, coloured by radius 24 pores, coloured by radius 24 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.63 3.14 25.9 -3.24 -0.78 17.1 84 7 1 10 1 0 0 0   2 1.91 2.04 29.2 -1.12 -0.52 8.6 83 3 1 5 3 2 0 0   3 2.57 4.79 63.3 -1.64 -0.43 18.4 83 5 7 8 6 3 3 0   4 2.27 4.83 74.7 -1.91 -0.45 19.6 82 7 8 10 7 3 3 0   5 2.27 4.94 74.7 -1.98 -0.47 19.9 85 7 8 14 9 4 2 0   6 2.57 4.76 77.2 -1.77 -0.45 19.0 85 5 7 11 9 4 2 0   7 2.63 2.79 78.6 -0.19 -0.12 11.6 92 4 2 8 11 1 1 0   8 2.34 3.62 85.5 -2.75 -0.57 23.8 83 14 8 15 5 2 0 0   9 1.35 1.36 87.1 -0.35 -0.13 12.0 86 6 3 9 14 3 2 0   10 1.31 1.34 90.0 -1.57 -0.30 18.4 82 6 7 11 13 6 3 0   11 1.29 1.30 90.4 -0.34 -0.12 11.3 88 6 3 13 16 4 2 0   12 1.72 1.71 93.9 -0.77 -0.18 16.1 81 6 8 12 7 8 1 0   13 1.73 1.71 96.8 -1.31 -0.25 18.7 78 7 14 12 5 11 2 0   14 1.84 1.81 97.4 -0.76 -0.17 15.4 82 6 8 16 9 9 1 0   15 1.92 1.90 103.4 -1.56 -0.33 19.7 78 6 14 15 6 11 2 0   16 1.74 1.74 102.5 -1.54 -0.37 20.8 79 6 15 12 4 9 3 0   17 1.26 1.28 112.3 -0.72 -0.13 16.4 82 8 9 15 12 10 0 0   18 1.20 1.39 140.6 -0.45 -0.20 14.4 89 10 5 12 15 0 1 0   19 1.20 1.39 140.3 -1.22 -0.31 18.4 85 10 9 13 13 3 2 0   20 1.22 1.39 144.0 -0.48 -0.20 13.9 90 10 5 16 17 1 1 0   21 1.33 3.70 150.0 -1.98 -0.69 17.1 90 8 5 13 3 0 3 0   22 1.36 3.87 159.8 -1.79 -0.68 16.4 91 9 6 22 4 1 3 0   23 1.30 3.79 194.9 -1.89 -0.70 16.7 92 13 7 26 5 0 3 0  NAG 1 I 24 1.70 1.85 63.5 -1.20 -0.63 8.2 81 3 2 3 3 0 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.