PDBsum entry 5tyo Go to PDB code:  Pore analysis for: 5tyo calculated with MOLE 2.0 PDB id 5tyo Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   3 pores, coloured by radius 3 pores, coloured by radius 3 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.18 1.42 33.5 -0.35 0.23 13.1 74 3 3 2 4 3 0 0   2 3.37 3.37 35.3 -2.11 -0.47 25.7 88 5 1 4 1 0 0 0   3 1.21 1.42 36.2 -1.50 0.14 19.7 76 5 2 2 4 3 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.