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PDBsum entry 5tyc
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Tunnel analysis for: 5tyc calculated with  MOLE 2.0
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PDB id
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5tyc
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Tunnels calculated on whole structure |
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Tunnels calculated excluding ligands
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11 tunnels,
coloured by tunnel radius |
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4 tunnels,
coloured by
tunnel radius
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4 tunnels,
coloured as in
list below
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Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
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Free R
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Length
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HPathy
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HPhob
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Polar
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Rel Mut
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Residue..type
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Ligands
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Radius |
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1 |
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1.40 |
1.45 |
37.7 |
-3.11 |
-0.55 |
37.7 |
82 |
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8 |
3 |
3 |
0 |
0 |
1 |
0 |
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MG 501 A PPV 503 A DA 4 P EDO 101 P DA 5 T DT 6 T
DA 7 T
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2 |
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1.19 |
1.19 |
19.2 |
-1.73 |
-0.35 |
21.9 |
87 |
3 |
0 |
0 |
1 |
0 |
1 |
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DC 2 D DC 3 D DG 4 D
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3 |
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1.19 |
1.19 |
19.2 |
-2.79 |
-0.47 |
33.4 |
87 |
4 |
0 |
0 |
0 |
0 |
0 |
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DC 2 D DC 3 D DG 4 D DG 2 T DG 3 T
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4 |
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2.77 |
3.27 |
20.8 |
-3.24 |
-0.39 |
21.8 |
68 |
2 |
0 |
1 |
0 |
1 |
1 |
0 |
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Residue-type_colouring |
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Positive
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Negative
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Neutral
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Aliphatic
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Aromatic
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Pro & Gly
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Cysteine
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H,K,R
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D,E
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S,T,N,Q
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A,V,L,I,M
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F,Y,W
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P,G
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C
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MOLE 2.0 program