PDBsum entry 5tmf Go to PDB code:  Pore analysis for: 5tmf calculated with MOLE 2.0 PDB id 5tmf Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   36 pores, coloured by radius 36 pores, coloured by radius 36 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 3.45 3.92 31.1 -2.27 -0.59 27.6 82 5 3 1 2 0 2 0   2 1.51 1.93 34.1 -2.13 -0.62 24.8 72 6 6 1 0 0 2 0   3 1.84 1.96 58.6 -1.96 -0.63 25.2 84 8 8 5 4 0 0 0   4 2.12 3.02 63.1 -2.48 -0.38 28.8 80 10 7 3 1 3 0 0   5 1.38 1.43 69.4 -1.48 -0.49 22.1 81 5 4 1 5 0 1 0   6 2.40 3.16 75.6 -1.45 -0.19 23.2 83 7 4 3 6 1 1 0   7 1.99 2.09 101.6 -1.99 -0.59 24.8 85 6 7 7 6 0 4 0   8 2.47 3.56 104.3 -1.63 -0.40 22.2 80 16 11 9 7 4 4 0   9 1.84 1.84 105.9 -1.79 -0.46 24.7 79 16 13 6 4 4 4 0   10 1.98 2.00 111.7 -2.16 -0.55 25.3 79 12 13 6 4 4 5 0   11 2.90 2.92 121.2 -2.40 -0.57 27.5 79 11 16 6 3 3 5 0   12 1.97 2.06 131.0 -2.32 -0.62 25.2 83 10 9 11 6 1 3 0   13 1.62 2.22 132.8 -2.11 -0.56 23.5 85 14 13 13 7 3 3 0  MG 1605 D 14 2.01 2.02 139.1 -1.44 -0.37 22.6 78 11 11 4 8 5 2 0   15 2.06 6.17 149.5 -1.44 -0.33 24.3 78 14 11 3 9 5 2 0   16 2.28 2.28 148.5 -1.83 -0.34 26.7 79 24 17 5 9 7 5 0   17 1.61 2.21 152.6 -2.66 -0.63 23.8 84 16 13 13 8 1 3 0  MG 1605 D 18 1.64 1.63 159.7 -1.83 -0.26 28.2 77 13 9 4 10 4 4 0   19 2.24 3.28 159.4 -1.95 -0.44 23.7 80 21 15 12 12 4 4 0   20 1.84 1.84 161.0 -2.08 -0.48 25.6 80 21 16 9 9 4 4 0   21 1.85 1.98 181.6 -1.81 -0.49 25.1 78 18 17 6 10 4 3 0   22 2.22 3.25 190.4 -2.31 -0.46 27.1 79 19 19 9 10 5 5 0   23 1.21 1.22 188.2 -1.68 -0.36 23.2 81 15 14 9 18 5 9 1   24 1.84 1.98 190.7 -1.85 -0.61 25.7 76 13 21 4 5 2 4 0   25 1.88 1.91 188.7 -2.11 -0.44 27.2 83 21 13 10 13 4 5 0   26 1.84 2.00 201.3 -2.14 -0.55 26.4 82 22 21 14 10 4 7 0   27 2.30 2.30 222.5 -1.80 -0.47 27.1 77 18 27 5 8 6 4 0   28 2.45 3.29 245.2 -1.77 -0.37 25.8 80 25 20 11 16 7 3 0   29 1.19 2.57 278.6 -1.74 -0.32 24.5 80 32 17 13 25 9 11 1   30 0.96 1.22 312.2 -1.90 -0.40 24.4 79 34 25 17 24 11 12 1   31 1.61 1.63 29.0 -0.60 -0.24 8.8 78 2 1 0 4 2 1 0   32 1.33 1.51 54.0 0.62 0.15 6.0 62 1 2 0 13 5 2 0   33 1.36 1.54 55.7 -0.10 -0.05 7.4 67 3 2 0 10 6 2 0   34 1.22 1.31 80.0 -0.30 0.12 13.1 68 5 3 0 11 6 3 0   35 1.25 1.49 81.1 -0.51 0.05 17.6 63 5 5 0 7 5 2 0   36 1.22 1.31 82.8 0.06 0.23 12.5 65 4 3 0 14 5 3 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.