PDBsum entry 5tmc Go to PDB code:  Pore analysis for: 5tmc calculated with MOLE 2.0 PDB id 5tmc Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   27 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.91 2.05 28.4 0.43 0.05 10.0 74 1 2 1 7 2 1 0   2 1.21 1.72 39.2 0.40 0.24 14.8 81 6 4 0 7 1 0 0   3 1.89 2.06 52.3 0.55 0.29 10.5 74 2 3 1 8 3 2 0   4 1.81 1.81 56.2 -2.21 -0.39 34.4 77 8 8 1 5 1 3 0   5 1.43 1.58 73.0 -1.69 -0.44 25.1 84 7 5 0 5 1 1 0   6 1.84 2.10 75.2 -0.98 -0.12 25.1 78 12 9 3 11 1 0 0   7 2.22 3.40 80.9 -2.21 -0.54 27.0 77 5 11 3 2 2 3 0   8 2.22 2.44 88.9 -2.06 -0.41 30.2 79 14 11 2 7 5 1 0   9 2.11 3.34 102.2 -2.41 -0.61 30.2 79 13 8 3 2 0 2 1   10 1.83 1.90 137.3 -2.03 -0.47 29.2 81 21 11 4 6 1 2 0   11 1.64 1.84 139.6 -1.59 -0.52 20.3 80 16 12 6 6 3 7 0   12 1.64 1.84 151.0 -1.81 -0.50 20.6 78 17 10 7 5 4 6 0   13 1.97 1.95 171.1 -1.80 -0.39 23.0 77 20 11 9 8 8 5 0   14 1.79 1.91 173.7 -2.32 -0.60 28.9 80 20 21 7 6 2 3 0   15 2.59 4.84 176.7 -1.73 -0.43 24.4 79 15 17 8 8 5 6 0   16 2.03 2.29 184.8 -1.77 -0.37 29.0 78 19 17 8 13 2 5 0   17 1.80 1.97 187.7 -2.52 -0.58 26.8 80 28 18 13 6 1 7 0  MG 1601 D G4P 1605 D MG 1606 D 18 1.80 3.21 186.8 -2.65 -0.55 32.8 80 20 11 3 5 1 3 1   19 2.63 2.79 191.5 -1.77 -0.44 24.7 79 22 14 8 9 3 5 1   20 1.74 1.83 195.8 -1.71 -0.44 21.3 81 23 18 16 10 4 8 0  MG 1601 D G4P 1605 D MG 1606 D 21 1.79 3.05 201.9 -2.14 -0.49 27.6 79 24 16 7 9 3 7 0   22 1.97 2.06 197.1 -2.11 -0.52 27.8 77 25 16 8 7 4 5 1   23 1.77 3.12 205.8 -2.06 -0.48 26.5 78 22 15 8 9 2 8 0   24 1.53 1.49 205.6 -1.73 -0.41 27.4 81 24 18 7 15 0 6 0   25 1.77 3.13 217.2 -2.28 -0.46 26.9 77 23 13 9 8 3 7 0   26 1.25 1.78 216.6 -1.83 -0.44 23.5 83 20 15 13 13 2 5 0   27 1.63 2.82 230.9 -2.11 -0.47 27.9 78 30 19 9 11 5 7 0   28 1.77 1.98 229.5 -2.14 -0.56 24.7 80 26 20 15 8 2 7 1  MG 1601 D G4P 1605 D MG 1606 D 29 1.69 2.88 285.9 -2.09 -0.41 26.4 78 30 15 9 12 5 5 1   30 1.17 1.43 305.0 -1.52 -0.39 24.5 79 31 24 13 25 3 5 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.