PDBsum entry 5thr Go to PDB code:  Pore analysis for: 5thr calculated with MOLE 2.0 PDB id 5thr Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   29 pores, coloured by radius 25 pores, coloured by radius 25 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.05 2.29 31.1 0.29 0.15 2.5 91 0 1 0 5 2 0 0   2 2.00 2.31 31.7 0.39 0.11 3.4 89 0 1 0 5 2 0 0   3 2.00 2.31 33.7 0.23 0.06 3.2 89 0 1 0 5 2 0 0   4 2.17 2.34 34.3 0.20 0.01 4.3 92 0 1 0 6 2 0 0   5 1.46 1.46 62.2 -0.22 -0.15 13.2 89 4 1 1 7 1 1 0   6 1.58 2.26 71.1 -1.64 -0.18 19.5 78 5 3 4 2 3 0 0   7 1.30 1.37 91.4 -0.91 -0.17 21.8 80 8 6 8 10 1 0 0   8 1.26 1.88 91.1 -1.24 0.10 12.1 77 5 4 2 4 7 2 0   9 1.60 2.26 94.1 -1.71 -0.29 20.4 80 8 4 7 5 4 1 0   10 1.35 1.35 95.2 -1.52 -0.20 19.8 76 8 7 6 10 4 2 0   11 1.39 1.89 94.7 -1.10 0.01 10.4 78 5 4 2 5 8 2 0   12 1.33 1.36 97.1 -1.14 -0.15 16.9 77 7 6 8 7 3 1 0   13 1.24 1.97 97.3 -1.10 -0.02 11.1 79 5 4 2 5 7 2 0   14 2.45 2.44 102.2 -1.75 -0.37 24.8 83 7 6 8 7 2 1 0   15 1.59 2.25 106.7 -1.51 -0.14 17.9 82 8 3 4 4 4 0 0   16 1.65 2.46 107.6 -1.30 -0.15 12.8 81 4 5 4 6 7 2 0   17 1.36 3.36 114.8 -0.12 0.24 9.1 79 4 7 9 12 8 1 0   18 0.74 2.71 123.4 -0.02 0.19 10.0 79 6 7 10 17 7 0 0   19 2.47 2.47 132.8 -1.56 -0.40 22.1 82 10 7 13 10 2 0 0   20 1.27 1.37 140.2 -1.38 -0.23 20.1 78 11 8 8 11 5 1 0   21 1.38 1.43 145.1 -0.23 0.09 12.8 81 7 8 12 17 6 0 0   22 1.44 1.69 146.8 -0.41 0.10 13.2 79 6 9 9 15 8 1 0   23 1.45 1.47 162.7 -0.84 -0.21 16.5 85 10 7 10 15 3 1 0   24 1.38 2.04 165.4 -1.67 -0.14 20.8 75 10 6 4 4 7 4 0   25 1.35 3.38 193.8 -0.59 0.02 13.8 80 10 10 12 18 10 1 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.