 |
PDBsum entry 5t5n
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5t5n calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5t5n
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
16 tunnels,
coloured by tunnel radius |
|
10 tunnels,
coloured by
tunnel radius
|
10 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.26 |
1.26 |
18.3 |
0.63 |
0.29 |
3.0 |
79 |
|
1 |
0 |
2 |
1 |
2 |
1 |
0 |
|
|
 |
|
2 |
 |
1.64 |
1.80 |
16.0 |
-0.81 |
-0.41 |
10.4 |
69 |
1 |
2 |
2 |
1 |
2 |
0 |
0 |
|
|
3 |
 |
1.24 |
1.24 |
23.6 |
0.09 |
0.05 |
5.0 |
80 |
1 |
0 |
3 |
1 |
2 |
1 |
0 |
|
|
4 |
 |
1.40 |
1.41 |
21.8 |
-2.28 |
-0.31 |
26.0 |
70 |
3 |
4 |
0 |
0 |
2 |
2 |
0 |
|
|
5 |
 |
1.47 |
1.63 |
20.6 |
-0.24 |
-0.59 |
3.4 |
97 |
1 |
0 |
6 |
2 |
1 |
0 |
0 |
|
|
6 |
 |
1.35 |
1.49 |
16.6 |
-0.16 |
-0.52 |
3.6 |
93 |
1 |
0 |
4 |
2 |
1 |
0 |
0 |
|
|
7 |
 |
1.37 |
1.51 |
20.6 |
-0.25 |
-0.59 |
3.5 |
95 |
1 |
0 |
5 |
2 |
1 |
0 |
0 |
|
|
8 |
 |
1.16 |
1.72 |
23.4 |
0.12 |
-0.40 |
1.9 |
98 |
0 |
0 |
6 |
2 |
1 |
0 |
0 |
|
|
9 |
 |
1.38 |
1.50 |
20.5 |
-0.25 |
-0.59 |
3.5 |
95 |
1 |
0 |
5 |
2 |
1 |
0 |
0 |
|
 |
10 |
 |
1.12 |
2.58 |
47.3 |
-2.82 |
-0.53 |
34.2 |
91 |
3 |
1 |
2 |
2 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program