PDBsum entry 5sy1 Go to PDB code:  Pore analysis for: 5sy1 calculated with MOLE 2.0 PDB id 5sy1 Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   11 pores, coloured by radius 12 pores, coloured by radius 12 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 2.21 2.21 43.5 -1.51 -0.71 18.7 86 4 2 1 1 0 0 0   2 1.21 1.31 57.7 2.09 0.64 2.0 74 1 0 0 17 3 1 1   3 1.08 1.07 62.7 -0.27 0.06 11.3 77 4 1 3 6 3 1 1   4 1.33 1.46 87.6 -0.29 -0.11 9.7 79 4 2 3 7 3 2 0   5 1.33 1.46 87.6 -0.29 -0.11 9.7 79 4 2 3 7 3 2 0   6 1.23 1.61 90.7 -1.32 -0.42 15.1 89 7 0 9 8 0 0 0   7 2.01 2.02 91.1 -2.34 -0.82 23.2 89 4 4 5 0 0 0 0   8 1.28 1.57 116.5 -1.57 -0.55 16.3 92 7 3 12 6 0 0 0   9 1.18 1.32 121.3 0.72 0.29 11.4 82 5 2 3 16 1 1 1   10 1.44 1.80 25.5 -0.53 0.53 6.6 78 1 0 2 4 3 0 1   11 1.42 2.02 39.3 1.23 0.74 4.5 80 1 0 1 10 4 0 1   12 1.44 1.80 30.0 0.45 0.78 5.8 83 1 0 2 7 3 0 1   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.