 |
PDBsum entry 5rv8
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5rv8 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5rv8
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
8 tunnels,
coloured by tunnel radius |
|
9 tunnels,
coloured by
tunnel radius
|
9 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
2.01 |
2.57 |
21.6 |
-1.68 |
-0.57 |
10.3 |
90 |
|
2 |
2 |
5 |
1 |
1 |
0 |
0 |
|
|
 |
|
2 |
 |
2.00 |
2.50 |
22.3 |
-1.45 |
-0.49 |
12.6 |
85 |
3 |
2 |
5 |
2 |
1 |
0 |
0 |
|
|
3 |
 |
2.03 |
2.58 |
24.1 |
-1.48 |
-0.53 |
9.0 |
88 |
2 |
2 |
6 |
2 |
1 |
0 |
0 |
|
|
4 |
 |
2.02 |
2.55 |
25.2 |
-1.40 |
-0.43 |
6.5 |
87 |
0 |
3 |
7 |
2 |
2 |
0 |
1 |
|
|
5 |
 |
1.20 |
2.10 |
21.1 |
2.56 |
0.60 |
1.0 |
74 |
0 |
0 |
0 |
10 |
1 |
0 |
0 |
|
|
6 |
 |
1.18 |
2.22 |
27.6 |
2.02 |
0.40 |
1.4 |
77 |
0 |
0 |
1 |
11 |
2 |
0 |
0 |
|
|
7 |
 |
1.25 |
2.27 |
18.4 |
2.48 |
0.59 |
2.6 |
72 |
0 |
1 |
0 |
7 |
1 |
0 |
0 |
|
|
8 |
 |
1.25 |
2.25 |
21.5 |
1.82 |
0.32 |
1.4 |
77 |
0 |
0 |
0 |
8 |
1 |
1 |
0 |
8EJ 201 A
|
 |
9 |
 |
1.25 |
1.41 |
27.3 |
1.55 |
0.24 |
1.6 |
79 |
0 |
0 |
1 |
9 |
2 |
1 |
0 |
8EJ 201 A
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program