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PDBsum entry 5rub

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Top Page protein Protein-protein interface(s) clefts links
Cleft analysis for: 5rub PDB id
5rub
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Binding-site(s)
Binding-surface(s)
Coloured by
 cleft (as in table below)
 closest atom type
 residue type
 residue conservation
Clefts
R1
ratio
Accessible
vertices
Buried
vertices
Average
depth
Residue..type
Ligands
Volume
1 5408.44 1.27 67.48 3 11.91 2 11.41 2 22 11 18 21 9 19 0  
2 4263.05 0.00 68.77 2 11.67 3 13.78 1 16 9 16 18 6 18 1  
3 2065.92 0.00 63.91 7 9.68 6 9.15 6 5 5 10 13 4 4 1  
4 1992.52 0.00 64.09 6 8.60 8 10.89 3 5 6 9 14 4 4 0  
5 2392.03 0.00 62.11 9 8.10 10 9.09 7 8 7 3 16 6 8 0  
6 1455.89 0.00 62.75 8 8.98 7 9.55 5 2 2 4 10 3 8 0  
7 939.94 0.00 99.12 1 12.47 1 0.00 10 2 0 4 18 6 10 0  
8 1316.25 0.00 65.87 4 10.11 5 7.58 8 6 5 5 6 3 6 0  
9 1274.91 0.00 64.81 5 8.39 9 7.01 9 6 5 5 6 4 7 0  
10 701.58 0.00 61.36 10 10.44 4 9.89 4 3 4 3 3 3 1 0  
 Protein structure

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C
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