PDBsum entry 5pep Go to PDB code:  Tunnel analysis for: 5pep calculated with MOLE 2.0 PDB id 5pep Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   4 tunnels, coloured by tunnel radius 4 tunnels, coloured by tunnel radius 4 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.27 1.64 35.1 -0.04 -0.29 9.4 84 0 2 1 5 2 0 0   2 1.29 1.91 36.8 0.33 0.01 8.1 79 0 3 0 7 5 0 0   3 1.03 2.86 38.5 0.27 -0.18 8.0 81 0 2 1 7 3 0 0   4 1.02 2.80 40.2 0.41 0.06 7.9 78 0 3 0 9 6 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.