spacer
spacer

PDBsum entry 5of0

Go to PDB code: 
Top Page protein ligands metals pores links
Pore analysis for: 5of0 calculated with MOLE 2.0 PDB id
5of0
Pores calculated on whole structure Pores calculated excluding ligands

View options
MOLEonline 2.0 manipulation
and
visualization
with HETATM:
without HETATM:
 
2 pores, coloured by radius 2 pores, coloured by radius 2 pores, coloured as in
list below
Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown.
Pores
Free R
Length
HPathy
HPhob
Polar
Rel Mut
Residue..type
Ligands
Radius
1 1.76 2.01 25.7 -1.10 0.25 7.4 60 1 0 1 1 4 2 0  NAG 808 A
2 1.68 1.72 74.0 -1.65 -0.38 20.2 81 8 5 5 5 2 2 0  NAG 1 E NAG 2 E

Residue-type_colouring
Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine
H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C

Acknowledgement
Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.
spacer
spacer