 |
PDBsum entry 5of0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnel analysis for: 5of0 calculated with  MOLE 2.0
|
PDB id
|
|
|
|
5of0
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Tunnels calculated on whole structure |
|
Tunnels calculated excluding ligands
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
|
|
|
5 tunnels,
coloured by tunnel radius |
|
6 tunnels,
coloured by
tunnel radius
|
6 tunnels,
coloured as in
list below
|
|
|
|
|
|
Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. |
|
|
|
|
|
|
|
Free R
|
|
|
|
|
|
|
Length
|
|
|
|
|
|
|
HPathy
|
|
|
|
|
|
|
HPhob
|
|
|
|
|
|
|
Polar
|
|
|
|
|
|
|
Rel Mut
|
|
|
|
|
|
|
Residue..type
|
|
|
|
|
|
|
Ligands
|
|
|
|
|
|
|
 |
Radius |
 |
1 |
 |
1.11 |
1.26 |
39.0 |
-1.00 |
0.00 |
10.3 |
75 |
|
5 |
1 |
3 |
1 |
4 |
0 |
0 |
|
9TB 822 A
|
 |
|
2 |
 |
1.21 |
1.21 |
49.8 |
-1.26 |
-0.24 |
15.8 |
75 |
7 |
4 |
3 |
5 |
5 |
0 |
0 |
9TB 822 A
|
|
3 |
 |
1.22 |
1.22 |
50.1 |
-1.21 |
-0.18 |
16.9 |
77 |
8 |
4 |
4 |
5 |
5 |
0 |
0 |
9TB 822 A
|
|
4 |
 |
1.14 |
1.16 |
75.2 |
-1.64 |
-0.26 |
15.1 |
79 |
8 |
6 |
8 |
5 |
4 |
1 |
0 |
9TB 822 A
|
|
5 |
 |
1.61 |
2.43 |
15.0 |
0.59 |
-0.05 |
5.7 |
81 |
1 |
1 |
1 |
6 |
1 |
0 |
0 |
|
 |
6 |
 |
1.14 |
1.31 |
18.2 |
-0.77 |
-0.55 |
3.8 |
104 |
1 |
0 |
6 |
2 |
0 |
0 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
 |
|
|
 |
Residue-type_colouring |
 |
|
|
|
Positive
|
Negative
|
Neutral
|
Aliphatic
|
Aromatic
|
Pro & Gly
|
Cysteine
|
|
H,K,R
|
D,E
|
S,T,N,Q
|
A,V,L,I,M
|
F,Y,W
|
P,G
|
C
|
|
|
|
MOLE 2.0 program