PDBsum entry 5o5t Go to PDB code:  Tunnel analysis for: 5o5t calculated with MOLE 2.0 PDB id 5o5t Tunnels calculated on whole structure Tunnels calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   5 tunnels, coloured by tunnel radius 3 tunnels, coloured by tunnel radius 3 tunnels, coloured as in list below Tunnels are interior spaces connected with the protein surrounding. Only channels longer than 15 Å are shown. Tunnels Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.62 1.95 16.5 -0.84 -0.34 10.8 80 1 0 1 2 0 3 0   2 1.61 1.95 28.7 -0.83 -0.18 12.9 80 2 1 2 3 1 4 0   3 1.19 1.30 16.8 -1.47 -0.49 17.2 75 2 1 1 2 0 0 0   Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Tunnels were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.