PDBsum entry 5nif Go to PDB code:  Pore analysis for: 5nif calculated with MOLE 2.0 PDB id 5nif Pores calculated on whole structure Pores calculated excluding ligands View options MOLEonline 2.0 manipulation and visualization with HETATM: without HETATM:   30 pores, coloured by radius 30 pores, coloured by radius 30 pores, coloured as in list below Pores are connected internal spaces going through the structure. Only pores longer than 25 Å are shown. Pores Free R Length HPathy HPhob Polar Rel Mut Residue..type Ligands Radius 1 1.84 1.87 91.5 -1.68 -0.37 20.8 86 8 6 6 6 1 3 0   2 1.47 2.84 114.8 -1.95 -0.38 23.2 79 16 8 9 4 6 1 1  GOL 301 1 CL 301 O 3 1.90 2.13 116.7 -2.12 -0.49 26.8 85 13 10 6 4 3 1 0   4 1.73 1.86 120.4 -2.31 -0.62 24.3 81 7 9 5 3 3 1 0   5 1.62 1.64 120.3 -2.02 -0.51 24.9 83 14 10 9 5 7 0 0  GOL 301 1 6 1.87 2.06 124.3 -2.18 -0.40 25.9 79 15 8 8 4 5 2 0  GOL 301 1 7 1.23 1.77 127.2 -2.16 -0.42 22.9 81 15 9 11 8 4 1 0  GOL 301 1 8 1.66 3.29 131.3 -1.94 -0.43 22.8 80 10 13 7 3 6 2 0   9 1.36 2.25 140.3 -1.80 -0.41 22.6 81 13 9 9 11 8 1 0   10 1.43 1.73 144.2 -1.90 -0.30 23.3 77 14 7 8 10 6 3 0   11 1.76 1.85 153.7 -2.52 -0.45 29.4 82 22 10 10 3 5 2 0  GOL 301 1 CL 301 R EDO 202 Y 12 1.41 2.29 160.1 -1.79 -0.30 21.4 79 16 9 10 10 8 2 0  GOL 301 1 13 1.22 1.48 160.8 -1.46 -0.43 15.6 83 12 6 14 9 7 2 1  EDO 302 1 CL 301 O 14 1.62 3.25 167.9 -2.54 -0.59 28.4 80 16 17 11 3 6 2 0   15 1.22 1.48 171.2 -1.46 -0.50 17.1 86 9 8 14 10 8 1 0  EDO 302 1 16 1.18 1.30 173.0 -1.38 -0.42 15.6 82 10 6 13 9 6 3 0  EDO 302 1 17 1.20 1.45 184.2 -1.78 -0.58 17.8 85 13 8 12 8 5 1 0  EDO 302 1 MG 301 D GOL 201 J EDO 302 L 18 1.18 1.40 192.9 -1.96 -0.55 19.9 85 15 9 15 10 3 2 0  EDO 302 1 GOL 201 J CL 301 N 19 1.23 1.41 200.1 -1.69 -0.47 17.8 84 14 8 17 13 6 2 0  EDO 302 1 CL 301 O 20 1.21 1.49 206.8 -1.22 -0.34 14.3 80 14 6 17 11 11 3 0  EDO 302 1 GOL 201 J 21 1.19 1.50 204.4 -1.55 -0.46 16.9 84 13 8 16 12 5 2 0  EDO 302 1 GOL 201 J 22 1.21 1.25 211.7 -1.84 -0.49 17.4 83 12 9 19 8 9 1 0  EDO 302 1 GOL 201 J EDO 302 L 23 1.71 1.78 218.0 -2.56 -0.55 26.0 84 22 10 12 4 5 0 0  GOL 301 1 EDO 302 1 MG 301 D GOL 201 J EDO 302 L 24 1.22 1.51 227.9 -2.20 -0.47 22.9 84 21 9 16 8 5 1 0  GOL 301 1 EDO 302 1 GOL 201 J 25 1.72 1.73 226.6 -2.62 -0.53 26.7 84 24 11 15 6 3 1 0  GOL 301 1 EDO 302 1 GOL 201 J CL 301 N 26 1.72 2.01 240.5 -1.75 -0.31 20.0 80 23 8 17 7 11 2 0  GOL 301 1 EDO 302 1 GOL 201 J 27 1.20 2.69 236.4 -2.44 -0.47 25.5 82 23 10 14 8 7 1 0  MG 301 D GOL 201 J EDO 302 L CL 301 O 28 1.93 3.96 245.4 -2.44 -0.47 23.9 82 21 11 19 4 9 0 0  GOL 301 1 EDO 302 1 GOL 201 J EDO 302 L 29 1.26 1.32 246.3 -2.14 -0.42 22.8 82 22 9 17 12 7 2 0  GOL 201 J CL 301 O 30 1.72 2.00 258.9 -1.81 -0.30 20.4 78 24 8 18 11 13 3 0  GOL 201 J CL 301 O Residue-type_colouring Positive Negative Neutral Aliphatic Aromatic Pro & Gly Cysteine H,K,R D,E S,T,N,Q A,V,L,I,M F,Y,W P,G C Acknowledgement Pores were calculated by MOLE 2.0 program version 2.5.13.11.08 and visualized using Pymol 0.97rc.